RNA id: CI01000016_03881771_03883341.mRNA


Basic Information

Item Value
RNA id CI01000016_03881771_03883341.mRNA
length 2759
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000016_03881771_03883341
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3880493 ~ 3883466 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGGACAACAAATAAGAAATAATACTTACATCAGATTCAACAACTTCTTCTTTGTTAAATAAGTCAAAACTTTTTTCACTCATCCCACTTTTGGTTCTCCTTATTGCTGGAGTAACTTCCAACATGGAAACTGCATATCTGCCATATGAACTCAAGGCACTTAACAGGCACCCGCACCTTGATGTTGCGACGTACGAGCATTGTTGTTCATTTGGCATCATCCGACGCCCGCGCTATGTGCATCGTTCAACCCGAAGGATTTTCAATGTGTACCAGTCAACACCTACTGGACAAACTTCAATTACAACACAACTGGAAATACAAGTGTATTGCAAACTCAACTGCCGCTCCATCTCAGATAAGGGTCCTTATCTAAACGAACTAACTACGGACAACAACCTGAATATGCTATTTCTTACTGAAACCTGGCAAACACAGATTGACTTTGTACATCTTAACCTGCTTACACCGGATGGATATCAATTCTTGGCTAAACCGCGTTTACATGGTGAAGGGGGTGGTCTTGCCGTCATCTACCAGAACTCTTTATCTATCACTCAGCTGGATTTCCATATTCCTAAGTCCTTTGAGTACATGGTCATCTTACTTGGTGACTTTAACATTCATGTTGATACTATCTGCTCTAACAGCACTCAATTAAAGACTGTCCTGGACTGCTTTAATCTTACCCAGAATGTTAATTTCCCAACTCACACTCATGGTCATACACTTGACTTAGTTTGTACGTCTGGTGTGAATAACATCTCCATCAGTGGTCATGCTATTCCTATCTCTGATCACAAGCTTATCACTTTTGACATTACGTTAATGCATCCTACTAAATGTGCTATTAATACTGCCATTTCTTATCGTAAAATCAATGATGTTAATGTAAATACTTTTGCTGCTTCAGTTGCTTCCTCTGCCCTTTCTGATGTCTCCAAATTCACCTGTCCATCTGTCATATCTGACCTATATCATTCTGCTATTTCTTATGTTTTAGATGAGCATGTTCCAATTAGGACCAGGTCTGTTCCTTTGTCCCACACCTCCCCCTGTTATAATGCTGAGCTTCGTGCTATGAAGGCAAAAGGCAGACAGCTTAAATGCCTCTTTAGAAAAACTGGCTTGACTGTCCATTTTCAAATGTTCTCAGAACATATTAGGCATTACAAAACTGCCTTGAATACAACCCGCTCTTCCTATTTTTCAGACATCATCAATAAAGCTAACAATAGGCCAAAAACACTGTTTAGCATGGTCAACAAATTAGTCCAGCCACCTAGCCATAGTCCCAGTCAATATGAATGTGACAATTTGTGTGGCTCTTTCTTGCGCCACTTTCAAAATAAATTGGATGCTCTATGTGGGTCTCCTGGCACTGAACCAACCACTTCTACTTGTGAGCAAGCTCATTCTATTCAACTATTTAATAATTTTACCTTGACTAATCCAACCTTAATTGCTGAAATAATATAGAACTCCAATTCTTCCTCATGCCAGTTAGATCCTGCACCCACATTCCTTCTGAAACACTGTACTTCTGTCATTTCTGCTCCTATCTCACACTTTGTAAATATGTCCTTTATCGCTGCCACTGTTCCAACTTCACTGAAATCTGCTGCTGTTACTCCTGTTCTTAAAAAACCAAACCTGGACCCAGCAGATTTCACCAACTACCGTCCAATCTCCAATTTACCATTTGTTTAGAAAATTATGGAAAAAGTTGTTACCAATCAGCTACAGTCTTTTCTAGCTTTTCTAGTCACTCTTGACCCTTCTCTGACACTGGATGTTTACATCAGTAAACTTTCCAAAGCTGCATTTTTCCAGCTACGCCGTTTAGCCCAGCTTCGTGCTTATGTTTCCCCAAAAGATGCTGAATCATTAGTGCATGCCTTTATTACATCACGCCTAGACTACTGAAATGCTCTTTTTGCTGGATTGCCATTGAACCCTATTTCTCGTCTACAATACATTCAAAATTCTGCTGCAAGAATATTAACCCACACTAAACGATCTGCTCATATTACCCCTATCTTTTTTAAACTCCATTGGCTCCCTGTCATCTCGCATTACTTACAAAATCCTTCTGCTTACCTTTAAATCACTCAATGACCTTGCTCCTCCTTATCTCTCTGATCTACTGTCTCCTTACATTCCACCTCGATCCCTTCGATCTTCAGGGTGTGCACTTCTTATAGTACCTAGATTTCGTCTATCTTCAATGGGCGGCAGGTCATTTTCTGTCATTGCACCTAAATTATGGAACTCTATACCACAAGCACTAAGGACAATAACCTCACTCTCTGTATTTAAATCACAACTCAAAACCTACTTGTTTACCCAATATTATCAGTCATTACATGTTCTTTAGCCACTCTCTAACTCGAACTCTCACTCACTTCCTGTACTACCAGCTGTAATTCTCTGTGAGTATTTTTGTCTGTGTATTTATGTTGCATCTACTATTCTTTGTTTTTCATCCATTGCGACAATCCTTTTTCTATTGTTACTTTTACTATGTCATGTATCTCTGTTTTATGTATGAAATTGTATCATGATATGCAACTGCATTCATTTCTATCCTTGGACTGGACAAATGTCTACTGTCCACTTGATTGTGATATGATTGTTTTGTTCATGTGAATCGACTGTCTCTGTAAAGCGTTCTTGAGCTTGGGAAAGGCGCTATATAAATTAAACATTATTATTATTATTATTATTATTGTTATCTAAAAAATGTCACATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109998 lncRNA downstream 15548 3864500 ~ 3864945 (-) True G96688
TU109911 lncRNA downstream 47931 3831525 ~ 3832562 (-) True G96629
TU109981 lncRNA downstream 59865 3819667 ~ 3820628 (-) True G96675
TU109978 lncRNA downstream 68994 3809510 ~ 3811499 (-) True G96672
TU109890 lncRNA downstream 88690 3787406 ~ 3791803 (-) True G96612
TU110001 lncRNA upstream 6654 3890120 ~ 3913448 (-) True G96690
TU110008 lncRNA upstream 12569 3896035 ~ 3952982 (-) True G96695
TU110041 lncRNA upstream 83876 3967342 ~ 3967897 (-) True G96719
TU110051 lncRNA upstream 86045 3969511 ~ 3971844 (-) True G96728
TU110052 lncRNA upstream 90341 3973807 ~ 3974048 (-) True G96729
CI01000016_03834829_03843163.mRNA mRNA downstream 37227 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 157435 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 204908 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03555967_03558776.mRNA mRNA downstream 321307 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 549731 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03921124_03930996.mRNA mRNA upstream 36589 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_04044171_04047247.mRNA mRNA upstream 160549 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 201258 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 297797 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 342973 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
TU109910 other downstream 215180 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 894852 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1604218 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 1029242 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1442053 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1528793 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2275520 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 5005367 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile