RNA id: CI01000016_03921124_03930996.mRNA


Basic Information

Item Value
RNA id CI01000016_03921124_03930996.mRNA
length 2363
RNA type mRNA
GC content 0.36
exon number 9
gene id CI01000016_03921124_03930996
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3920055 ~ 3931162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTGAAAAACTGAAATACATGAGCATGTGACACACTTCTCCATTACACATTTCCACAGTCAGTGAAATGTAGCTGTAGCGTGAGATTCAAGACTAAACACTCAGTTGGTCAAGTAAGAGGAAGGGTTGGCAGAAAGATTGTCAGAAGATTGTTAAAAAAGATAAAATGTGTCATATGTGTCTTCTGGAAATGATCATTCTCTGTTCACTTCTAACAGGTATGACTGTAGCTGAAGTAACTCATGTGTTCAGGACTTTTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCTTTTCCTGGCTGCACATCAACTACATGGAACTATAACAGACATTCAGAGACAGTTGAACTGATTGCTGGAGGGAAAAAGAAGAATAACATAGAGAGACGTGAGAGACTGAGTGTGGGGTCTGACTGCTCTCTGAACATCAAGAAAGTCACACAAGAGGATTATGGGCTTTACACCTGCCGACAATATGTGAATGGAAAACAAGGAACTGATGCACGTGTTTATCTGCATTTTCTTCATGTCTCTTCATCATCCTCACAGACTGAGATCAGACCAGGCAGCTCTGTGACTCTCTCCTGTCAGTTGTATTATGAAAGAGTCTCTTGTGATACTTTGGTCCATACTGAGGGAATTGAGCTGATCTGGGTGAATCAGGCTGGTGTTAGTGTGATGACAGACTCCAGATATCAGATATCATTCTCCTCAACACACTGTATCAGCACTCTGACTACAACACTCCTGAATGAAGATCTCAACAGAGAGTGGAGATGTCAGGTTACTCAGAGAAATCAACTGAAGACCTCAGCCACATATACTGTCAAGTATTCAGCTTCAAACGAGACAAAGACAACGACTCCAGTCACCAACTTAAAGACAACAACAACTGTAAATAAACCAGTAACTTCTAGACAATCAGTGATTGTAATGGTTGGTGTTGTTGCTGCATTGGCTGTTCTCCTTCCTGCTGTTATTTTTTGTGTGGTTTGTAAAAAAAGAGGGGATAATAGAAGAGGGACTAATGACTTTCTGGTCACAAATATGAAAAAATATAATGGAACCAATGATACAATCAACATTTCCATTCATCCTACTGCCAGCGCTAATGAGCAGCAAGGTAATGTGACTTATGCTGAGGTTGTCACATACAGTAAAAACCCAGCCAAAAATAACAAGGTTCATGTTGAAGATAAAGTGACTTACGCTTCAATCAGAGGAGCAACAGCTGGACCTCAGGATAACTGCAGTCAACTTTATGCCTCTGTGAACAAAAACTGTCACAAATAAATCAGACAGTTATTAATCATACAAAGACCTCATAATATCATGAGGAGAGAAATGCCTATAATTGACTTTGTTAACCTGCTGACTTGTTAAATACCGTCTTTCAAATGCATGTTAACAAACAAACTCAAGTGTAGAACAGATTTATTTGTAGGACGTTCAGGATTTTTATTTCAGAGTTACTTTCTTGTTGATCAAGAGAACCGTTTTAAATTATAAATCATTCCAAATCTTCCGTTTCTCTTATTTTTTGCAACTCTTCATTCTCCAGTAGTGTTTTTAATAGTCATACTGTATTACGTACTGGACAACATCCTTATTTGTGACTAATGCAGAGATGATTGAAAGTGTTCTCAACAGAGCTGTAGAGGAAGTGCTGTGCAGTCAAATTCTGCACTGTCAGCCGATCATCTTTCTGGTGACTATGTGCTATGTAGGGTACAACTAAAGGCACACCCTAAGAAAAATGTACTTTTCACTACTCCTGTAGTTTTTGATTGCAGAATTTTTCTTCAATGTTTTTATTGAACTGATGAAGCAACAGATTTTGTGTGAGAATAAGAGTGTGTTATAGAGTGTTTTTTTTTTTTAATTGTACAAATGTATGTGTGTGAGGGACCGGGAAGCCAAGGACAAGGTGATATTTATTTTTGTTCAATAAATATACTATGGTTAAAATGTTCATTTTAAAAATACACAAACAAAATAATATTTAAAAAAGTAAAGATTCTGAAACATTGAATGATATCCCATAATAATTTAAAATAGCTTTACAGTAGTAACAATTAATGTGATATATAATTAATATTTTAAAATATGATGGTTTCATTATAAATATGGTGATTAGGTGGACACCCAAGTTGATACTGTAATCATATGATATTTACCATCTGAATCTAACCATGTCATGTCAAATGGAAAAGTCTGGTATCATGAGTTAGCCCCTCCTCCTTGGAAGAAAACATCCGTATGTGACCAATCCTTCTGCAAAAAATACATTTCAAGCTAAAAAAAGTAATTTTTGTCATACTGTCCAAACTGTTTGCGTGAAGCACTTTAAAGTCATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110001 lncRNA downstream 6607 3890120 ~ 3913448 (-) True G96690
TU109996 lncRNA downstream 17297 3863165 ~ 3902758 (-) True G96686
TU109997 lncRNA downstream 32297 3862069 ~ 3887758 (-) True G96687
TU109998 lncRNA downstream 55110 3864500 ~ 3864945 (-) True G96688
TU109911 lncRNA downstream 87493 3831525 ~ 3832562 (-) True G96629
TU110041 lncRNA upstream 36180 3967342 ~ 3967897 (-) True G96719
TU110051 lncRNA upstream 38349 3969511 ~ 3971844 (-) True G96728
TU110052 lncRNA upstream 42645 3973807 ~ 3974048 (-) True G96729
TU110045 lncRNA upstream 49542 3980704 ~ 3984004 (-) False G96723
TU110046 lncRNA upstream 49542 3980704 ~ 3983883 (-) True G96723
CI01000016_03881771_03883341.mRNA mRNA downstream 36589 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 76789 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 196997 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 244470 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03555967_03558776.mRNA mRNA downstream 360869 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_04044171_04047247.mRNA mRNA upstream 112853 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 153562 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 250101 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 295277 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 332767 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
TU109910 other downstream 254742 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 934414 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1643780 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 981546 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1394357 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1481097 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2227824 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4957671 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019691 True 627 mRNA 0.44 2 NC_007127.7 21867161 ~ 21867872 (+)
bowfin (Amia calva) AMCG00006286 True 756 mRNA 0.54 3 CM030134.1 1573128 ~ 1574818 (+)