RNA id: CI01000016_04264738_04270463.mRNA


Basic Information

Item Value
RNA id CI01000016_04264738_04270463.mRNA
length 3975
RNA type mRNA
GC content 0.40
exon number 15
gene id CI01000016_04264738_04270463
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4263929 ~ 4272171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAGCTGTATTTTACATCACGACTAAGCCAAGGTATGATCTTGTTTAGTTTGAATATTCAGATAGCTGAATCAAAGATGTTATGCTGCATTTATAGTATTAACTACTGAATAAGTTGTACAAAATTTATTTTAATGTAGAATCCAGTATGATTGATGTTGTTATTGTGGTTGTACTATAGTTCAATATCATTTTGATATTCTGCCTTTAAAAGAGTGTATTGTGGTTAGAGAACGTGTTGTTGTTTTGTTGTGTTTGGTAGTCTTTTGTAAAAGAGAGTCTGTGTCTTACAAAGATGTAGTTAATGGCATTTTGTAATAATTGTGTAATTAAATAACAAGGAAGTGCTACTAATTGTATATGATATATTTGAGATACATTGGTGGTACATTGTAATTTTATAAATGACAGATTATATCTGCAGATTAGAGTAATGTGTTATTGACCACAAATAAAAAAAATCAACAATTTCTGCTGTCTCCTGTGAGCTGTAGTTCAGCGTTTTATAAATTAATACTTTCATTCAGCAAAGGCTCATTAAATTGATCAAAAGTGACAGTGATGACATTTATAATGTTACATAAGATTTCTATTTCAAATAAATGCTCTTTTAAATTTTTTATTCAGCAAAGAAACCTGTATTTGACAGCACAACATTTAAACATAGAATCCTCTGTCCCATGAAACACATTTTGCTGGACTGTAATACTTCTACCACTTTGAGGAACTTGTTTTATTCTGTTGATACCAAGTAAATCCAAATTTAGTCTTAAAGGGTTAGTTCACCCAAAAATGTTTGTCATTAATTACTCACCCTCATGTCGTCCCAAACCCGTAAGACCTTTGTTCATCTTCGGAACACAAATTAAGATATTTTTGATGAAATTCGAGAGGTTTCTGAACCACACATAGGCAGCAATGTCATTGCACCTTTTAACGTCCAGAAAGACATTGTTAAAATAGTCCATGTGACTACAGTGCTTCAATCTTAATGTTATGAAGCGTCGAGAATACTTCTTGTGCGCAAAAATAACAACTTTATTTAACAATTTGAACTGTTGTCATACGCAGTTGACGCAGTGAACGCAGTGCAGCGCTTCCATGTTTACGTCAGAACGCCGGCTCATTATTGGCTGACGCTGAGCAGCATGACGCATGCGCGCCGTTCTGACGTAAGTACGAGGAAGCACTGCACTGCATTCACTACATCAACTGCGTATGATAACAGTTCAAATTGTTAAAGTCGTTATTTTTGTTTTGTTATTAATACATTAAGGTTGAACCACTGTAGTCACGTTGACTATTTTAACAATGTCTTTAATACCTTTCTGGACCTCAAAAGGTGCAATGACGTTGCGTATGTGTGGATCAGATTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTACGGGTTTGGGATGGCATGAATGTGAGTACTTAATGACAGAAATGTTTTTTTTTTTTTTTTGGGTAACCCTTTAAGGTTTTTAGAAAAAAATGAATCCTAAACATATATATATATTTTTTTTTTCATTAAACACTGCTGAATTCAACAGAACAACATTTAAAACATCACATCTGACCATCCTTGCTGTGCCATGAATAGTATTGTTTTCTAAATTGTGTCAGAATGAACAATTGTAATACCAAGCATTAATATTGTGGTGAGGTATTGTGGGCTGAGATCATTAATAATGATATCTCTTCTAGGGTACATCTGCAGCAGTAAACTGGTTCCTTTCAGTCAATATGTTGGCACAGCGCTGGTCTGTCTGCTGGGAGTGGCCTGTCTGAGAGGGTGGGGGCGCTGGAGAAACCCAGAGTACCTTCAGTTCATCTCCATACTGGAGGAGACCAGGAAGAACCACACGCCTAGCAACAAGAAAAAACTGGCGTGCTTTGACTTTGACTTCAAACACTGGCCTGTAGATTTCAGCTGGAAAGAAGTTAGTAGTCCGAAGTTGTCTAAAGGTGGTGTGTCCCTGCTACGGCCAGAGCCGAAACACAGAGGAGCAGCAGACGGTGTGCTGAGTTCAGTTCGCACACTGCCATGCCACATCTTAAGTTATCTGATAGCTCACTCTTTCGGTCGGAGGATGCTGTACCCGGGGTCAGTGGGTCTACTGCAGAAGGCCATGAGGCCCATGTTACAGCAGGGACAGGCCAGACTCGTAGAAGAGTATGATGGTCAGCGGAACAAACTGGTGGCTTGTGATGGGAATGAGATTGACACCATGTTTGTGGATCGGAGGAGAGATGGAGGACCAGCTGGAAAAACTCTGGTGATCTGCTGTGAGGGAAACGCAGGATTCTACGAGGTCGGCTGCATGAATACGCCACTGGAAGGTGGATACTCAGTGTTGGGCTGGAATCACCCAGGGTTTGGCGGCAGTACAGGAGTTCCATTTCCTCAAAACGAAGCCAACGCGATGGACGTCGTCATTCAGTTTGCCGTGCACAAACTGGGCTTCCAGTTGAGTGACATCATTGTGTACGCCTGGTCAATAGGGGGCTTCACAGCCAGTTGGGCTGTGATGTCATACCCAGAGATCCGAGCTCTGGTTCTAGATGCCTCATTTGATGATCTTTTACCCCTTGCGCTGAAGGTCATGCCAGAGAGCTGGAGACCCTTGGTCACCCATACAGTGAGGCAGTACATGAACCTGAACAATGCTGAACAGCTTTGCAAGTACCAGGGTCCAGTGTTATTGATTAGAAGAACTAAAGATGAAATCATCACTACCACGGGTCCAGAAGACATCATGTCCAACAGAGGGAATGACCTGTTACTCAAACTACTCCAGTACAGGTATCCTAAGGTCATGACAGATGATGCTATCAGAGCCGTCAGGCAGTGGCTCGCAGCAGGGACACAGATTGAAGGAGAGTCTGTGTACACCGGCTATGAGGTGGATGATGATTGGTGCTTGTCTGTGCTGCAGTCCTATCAGACAGACAGAGAGACACTGTTCCCCTGGAGCGTTGGTACGTGCTTCATACACAGTAGCCATGCTCACTTCCACAGCTTTAAATGGGTTGGTGTGGTACAAATGGGGACGTTCAGCAGTGATTTCTTTTACTATGGCTACAGTTTCTGCTTAAAACAATACAGACATTTGACTGTCGGCAATCTGATCCTCTATTTTAGGTGAAGACATGACGCTCGAGGGCAGAAGACAGCTTGCTCTATTCTTGGTATGTTACAAAAATATCAGAGTTTACACCTTGTTATACTGTAGTGTAGTATATTGTAGTTACCCACATTCTTGCATATCAGAGTGCAATAAGCTCTTATATGCTTTGTATCATACTTCATTATCACAGTTCAAACCATAATTCCCATCTTTATATATAGTATTTAAGCTATTAAGGGCTTTTGAGTAAGTATTTGTTATCATTAACCGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCAGGCACGGAAGTATATGCGAAATTTTGATACTACACACTGCACTCCACTCCCCATTTCTGAGTTCAGGCCTCCCTGGAGACTCTAGAGAGCCAATGAGAAAGACAGGAAGAGAGCACTGGAGGTCAGAGGTCAAAGGGAATCACATACCGGTACATTTGAGTCAGTTCTGTGGGACGGCAGGAAGGCGTTTAGAATTAGTCCTTCATCTAAATGTGACAGGGTTACTCGTGTTTTTTTTTTTTTCTTTGTTTTTTTTCGCATGATTTGATAGAGGCGTTTTAAATTATTGGTTGTGCCATGCCTCCATCGCAGTGGAAATGAAATGTGCCGACGCTCAGGTTTGTCGTCACCGTCTGGACGTTTGTTTCTTTTGAGAGACTCTCATTGATGGGACTCAAAGATCTCTTGCCTCTTTCTCAGTCTGTTTTTATTTTTATCCTCTATTTTGTGGAGCACTGTAATTATGAACAAATCGTATCGTTAAATAATGTTCTGAATGTTATATTGTATATGAATATTAAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110145 lncRNA downstream 80962 4182501 ~ 4182967 (-) True G96810
TU110127 lncRNA downstream 141554 4120516 ~ 4122375 (-) False G96792
TU110126 lncRNA downstream 141640 4120679 ~ 4122289 (-) True G96792
TU110128 lncRNA downstream 143578 4118297 ~ 4120351 (-) True G96793
TU110123 lncRNA downstream 195375 4068353 ~ 4068554 (-) True G96789
TU110092 lncRNA upstream 50234 4322405 ~ 4367971 (-) True G96758
TU110214 lncRNA upstream 96208 4368379 ~ 4368688 (-) True G96872
TU110197 lncRNA upstream 129553 4401724 ~ 4403376 (-) False G96857
TU110196 lncRNA upstream 135081 4407252 ~ 4413705 (-) True G96857
TU110261 lncRNA upstream 209778 4481949 ~ 4482313 (-) True G96909
CI01000016_04226585_04232287.mRNA mRNA downstream 31642 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04181435_04188590.mRNA mRNA downstream 75339 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04084854_04101874.mRNA mRNA downstream 161976 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04044171_04047247.mRNA mRNA downstream 216624 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_03921124_03930996.mRNA mRNA downstream 332767 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_04277441_04297655.mRNA mRNA upstream 4787 4276958 ~ 4298217 (-) True CI01000016_04277441_04297655
CI01000016_04300720_04301736.mRNA mRNA upstream 28478 4300649 ~ 4303507 (-) True CI01000016_04300720_04301736
CI01000016_04333323_04333836.mRNA mRNA upstream 60702 4332873 ~ 4333836 (-) True CI01000016_04333323_04333836
CI01000016_04370577_04377413.mRNA mRNA upstream 97871 4370042 ~ 4378117 (-) True CI01000016_04370577_04377413
CI01000016_04385978_04389107.mRNA mRNA upstream 113551 4385722 ~ 4390070 (-) True CI01000016_04385978_04389107
TU110003 other downstream 332878 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 598616 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1278288 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1987654 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 640537 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1053348 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1140088 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1886815 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4616662 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020562 True 2174 mRNA 0.49 20 NC_007127.7 10477533 ~ 10516970 (-)