RNA id: CI01000016_04333323_04333836.mRNA


Basic Information

Item Value
RNA id CI01000016_04333323_04333836.mRNA
length 849
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000016_04333323_04333836
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4332873 ~ 4333836 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTGTGGAACATCGAAACCAGACAACAAGAGACGACGACATCGAAGAGGCGTATCATCCCATATTCAAGACTCCAAACTCTCTGGAAATCTACTTAAACCGTTTCCCATCTCAGAGGATACTTCCTTAATATTCTCAAGGCATCCGTTCCTTCATTACGGAATTCCTGGTGGAGACGTTGAGCTGGAAGGACGTAAACTAAGCTGCGTCGAAACCCCGGCCTATTCGGTGCCAGACGGATCAGAACGCGCCAGACCGGCCCGTGTCAGACCGACCACCCTTTCAAAGGTGAGAACAACTTCTTTCAGCAGCATTGATCCAGATGTGGCACTAATAGGGTCACTGAATCAAGATGGAAGCCCAGGGAAACAAAACTACGGTACCCAATATGCCCTCTGATGCTCGGGAACAGAGAGGGATGCTTATAGACTCAAGGGCAGTTGGTTTGAAAGATGATTTAGAGGGAGAACGAATATATGTGTGTGTGTCCAGTTTAAATCACACCGTGTACGTGTGCGAGACCCTGAGAGACTGGAGGAATAACTCACTGCCCTCGAGTCAGACACCACTTAACACGCTGACTCACTCTCATACACACACATACACTCAAACTACACCCGATAGAAAGCTTCCCCATGTGAATGTGTTTAAACTCAATACAGGTGAAACTAGTACAATCCATACTAGATTACAGATATAAATATGTGATATGTGCTCTCATATAGTTCTGTATGCACAGAGCCGTGGTTGACATGCGCAACATTCGACCTGGATATTCACCTCGCCCCGTCTCCGTATTTACAACATTTAGAAGTATAGACATTTTTTGTCATTTTTAAGAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110145 lncRNA downstream 149906 4182501 ~ 4182967 (-) True G96810
TU110127 lncRNA downstream 210498 4120516 ~ 4122375 (-) False G96792
TU110126 lncRNA downstream 210584 4120679 ~ 4122289 (-) True G96792
TU110128 lncRNA downstream 212522 4118297 ~ 4120351 (-) True G96793
TU110123 lncRNA downstream 264319 4068353 ~ 4068554 (-) True G96789
TU110214 lncRNA upstream 34543 4368379 ~ 4368688 (-) True G96872
TU110197 lncRNA upstream 67888 4401724 ~ 4403376 (-) False G96857
TU110196 lncRNA upstream 73416 4407252 ~ 4413705 (-) True G96857
TU110261 lncRNA upstream 148113 4481949 ~ 4482313 (-) True G96909
TU110264 lncRNA upstream 152046 4485882 ~ 4486133 (-) True G96912
CI01000016_04300720_04301736.mRNA mRNA downstream 29366 4300649 ~ 4303507 (-) True CI01000016_04300720_04301736
CI01000016_04277441_04297655.mRNA mRNA downstream 34656 4276958 ~ 4298217 (-) True CI01000016_04277441_04297655
CI01000016_04264738_04270463.mRNA mRNA downstream 60702 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
CI01000016_04226585_04232287.mRNA mRNA downstream 100586 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04181435_04188590.mRNA mRNA downstream 144283 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04370577_04377413.mRNA mRNA upstream 36206 4370042 ~ 4378117 (-) True CI01000016_04370577_04377413
CI01000016_04385978_04389107.mRNA mRNA upstream 51886 4385722 ~ 4390070 (-) True CI01000016_04385978_04389107
CI01000016_04422169_04424433.mRNA mRNA upstream 88159 4421995 ~ 4424433 (-) True CI01000016_04422169_04424433
CI01000016_04636548_04646848.mRNA mRNA upstream 301991 4635827 ~ 4646916 (-) True CI01000016_04636548_04646848
CI01000016_04696937_04698098.mRNA mRNA upstream 362849 4696685 ~ 4698618 (-) True CI01000016_04696937_04698098
TU110003 other downstream 401822 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 667560 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1347232 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2056598 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 578872 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 991683 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1078423 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1825150 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4554997 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile