RNA id: CI01000016_05011639_05013290.mRNA


Basic Information

Item Value
RNA id CI01000016_05011639_05013290.mRNA
length 2976
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000016_05011639_05013290
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5009773 ~ 5013290 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAATGTTGATAAAAAGATGACTTTCATAATGGAAGACTTTAACTTTACTGGTGATTACAATGACAGCTACAGTGGGATTAATGAAGACGACTGCTGTGGACTTGTGTGTGATCAGGAGTCTAGCATGCACTTTGATTCCATTTTCATTCCGGTCCTTTACTCTCTGGCGCTGGTAGTGGGGCTGGTGGGAAATGGGCTGGTTCTGGTGGTTCTGTGGAAGAAAAGGCGGGGCTTGAACGTTACAGACATCTTCATCCTTCATCTGTGCTTAGCAGACACTCTGCTGCTGCTGACGCTGCCCTTCTGGGCTGTAGAGGCAGTGAAGGGGTGGATCTTCGGCACAGCGCTCTGCAAACTGACTGGAGCTCTGTTCAAGATCAATTTCTACTGTGGCATTTTCATGCTTTCCTGCATCAGTCTTGACCGCTACCTGTCCATCGTCCACGCAGTGCAGATGTATTCTCGTAAAAAGCCCATGGTGATTCACTGTTGCTGCCTGATGGTCTGGGTCTTCTGCCTTCTGCTCTCCATTCCTGACTTGAAATTCCTTGTGGCCATCGAGGACAGCAGACGTCAGGATAAAACAGAATGTGTTCCATTTTACCCCTCTGATCCTGAATCTTGGCATCTGGCCACTCGTCTGCTCTACCATATTTTGGGTTTCATTATTCCAGCGATAATGATGCTGTTCTGTTACTCATGCATCCTCCTGCGGCTGAGGCGTGGCTCTCAGGGCATGCAGAAGAAGAGGGCCATCCGTGTCATCGTAGCCCTCGTACTGGCGTTCTTCATCAGCTGGACACCCTACAACATCACCCTCATCGTTGACACCATACAAAGCAACCAGACTATCTATTCCACTAACCAAACATCCTGTGACGGCAACACAGCATTGGATGTAGCTCTTACAGCAACTTCCACATTGGGCTACTTACACTGCTGTGTCAACCCAGTGCTTTACGCTTTCGTGGGGGTGAAATTTCGCAAGCACTTGCTGGACATGCTGAGACCGCTGGGCTTCACGCTGAAGGGCCCTGCAGGCCTGGTGTCACGGAAAAGCTCTGCATGGTCAGAGTCAGTGGACACCTCTCACACATCTGCCTTCTGAAACATCATATGCCATCAAACCAATTTATGTACAGTCAGGAACCATGTCATCTTTTTCTGCAACCTTTAACATCTGTATCCGTATTATGTCAGAAGAGTATGGCTTTAAGTACCCAAGCGTTTCTGTTCACACCAAGGATGGTAACTATAACTAGTTTTAATGATCATTCTGAGAATCGTGAAGTCCAAACCACAACTATAAAGATAACAACACAGAGCAACGATATCACTGGAATCACTTTCAGAATGACTTTCCCAGCTGATTAACGATAAATTCATTAACAGACAATCAGAATCCACCCAACTTCAAAGATGAAGTATGTAAGATACATTCTCTTAACCCAGTTAATGGTTCATTGATTACTATTAGTATGTCATTCAAGGGTTTATCTCCCTCAAAAGTGTAAACATTGAGCCTCTCAGGCACCATTAAAACATTAAGAGCATTCTGCTTAGATCCATCAATCTCTTTCTAGCTCAACTTATAGCTTGAGTTTGGGGCGTAGCTACTATAGCAGGCGGAGCCAAAGGGTGTTTAGCCGGAGTGGATGGGACCATGACTGACGCATTACATGGGAAAAGACATTCAGCTTCGGTTACAGAAGTGCAAGCCAAAATTTGCTGCATTTAGACCTTTAAGTAATAAACAAGTAATGAACACGTCAAAGCGAAAGGGGCATTGCGATGCGAGCTACAACAGATGCTTCAATATCATACAGCATCATCATGTACCCGTTCAGAAAGACAAATGTACATGGCTTCAACAGAAACCTGAGCTTTTAATGGCAGCTGCAGTGACAAAATGACTTTACCAATTGGTGACTGACTTTTTTTATTTAGAAGGCAGGACTTATTCGGCCATATTCCACGTTGGACATTCTCCCCTTCATAAGTAATATCTTTGTATATCTAAAGTGATATGTTGGATGGGTTTATTATAAGTGATGCACTCGGATTTGCTCTACACAAAGTGTTAGCCTCTTCAGTTATTTCCTCATGACACATAGCAACACAGCTTAAAGTATTCCTAATATGTACTTTTATTGAAAATAGCCTTCATTTACCCATTGAGACATGCCTTCACAAGCACCCATAAGAGTTGTGATGTTCGAGTTGGGGCAGGCGCAACTTGCGAAAGGGGCGCTGGCAAGGTTGTTTGAAAATATGCTTTATTTTTGTAATTCCACTAGGTGCCACTAATATCGCACGAACTACATACTTCACCTTTAAAACAACAGATGACAAAACTGCAGCACATCACTTATAATAAAGAGAATATTATCATCCGTTGGTGTGGATTGTAATATTTATCTTTATTCTTATCTTTATAGTTATCGTTCTTGGTGTGAACAGGTCTTTAGTCTCATGACTGTGCTGATTAGCGTGCATGAATATAGAAAAGTCGTTTATCTTACATTCACATATTTCTATTTGCACATGTGGAATACTTTAGGTTATTTTTTGCATTTCTCAAATATACCTGATTGATTACAGCTCACACATTTTGGAGAGAGATAAAACTAGTTTCTATTTTGTCAAAATATAGAAACCATTTAAATCTTTGCAGATTTGTCCAGTGGATCAGACTTTTGAAAAAGTGTGAACAGCTGAATTTTACTGTTATACAAAAGTTCTGGAGTTAATGTATGTAGTGTCTAGAATTGTTCCTAAATGTATTTGTTAATTGTCTTATGTTTTTATTTTTTTTACGATGATGTTTTTAAATATCTCGATTTGCTGTAAATACATTATTAAAACATCTTAAAGACCTACTTGCCATGTAAAGCAAAACTGCAAATGTGTATTTTGGTGCTTACTGTCTTCTTATATTTTGATGTATAACTTTGTTGAACTTTGTATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110413 lncRNA downstream 38993 4969389 ~ 4970780 (-) True G97037
TU110481 lncRNA downstream 42471 4967002 ~ 4967302 (-) True G97101
TU110480 lncRNA downstream 43467 4966094 ~ 4966306 (-) True G97100
TU110478 lncRNA downstream 45142 4964408 ~ 4964631 (-) True G97098
TU110477 lncRNA downstream 46129 4962586 ~ 4963644 (-) True G97097
TU110421 lncRNA upstream 54394 5067684 ~ 5073528 (-) True G97045
TU110521 lncRNA upstream 109790 5123080 ~ 5123476 (-) True G97135
TU110525 lncRNA upstream 177736 5191026 ~ 5191428 (-) False G97139
TU110530 lncRNA upstream 177936 5191226 ~ 5191428 (-) True G97139
TU110387 lncRNA upstream 179502 5192792 ~ 5204813 (-) False G97012
CI01000016_04995532_04996727.mRNA mRNA downstream 13046 4994812 ~ 4996727 (-) True CI01000016_04995532_04996727
CI01000016_04971399_04981029.mRNA mRNA downstream 28373 4971342 ~ 4981400 (-) True CI01000016_04971399_04981029
CI01000016_04936283_04939240.mRNA mRNA downstream 70533 4936013 ~ 4939240 (-) True CI01000016_04936283_04939240
CI01000016_04927541_04930989.mRNA mRNA downstream 78784 4926094 ~ 4930989 (-) True CI01000016_04927541_04930989
CI01000016_04921091_04922518.mRNA mRNA downstream 87255 4920868 ~ 4922518 (-) False CI01000016_04921091_04922518
CI01000016_05037135_05040030.mRNA mRNA upstream 23845 5037135 ~ 5041364 (-) True CI01000016_05037135_05040030
CI01000016_05052905_05056425.mRNA mRNA upstream 39085 5052375 ~ 5056425 (-) True CI01000016_05052905_05056425
CI01000016_05057407_05062686.mRNA mRNA upstream 43936 5057226 ~ 5062770 (-) True CI01000016_05057407_05062686
CI01000016_05086983_05098757.mRNA mRNA upstream 73523 5086813 ~ 5098757 (-) True CI01000016_05086983_05098757
CI01000016_05124385_05128589.mRNA mRNA upstream 110969 5124259 ~ 5128975 (-) True CI01000016_05124385_05128589
TU110416 other downstream 86369 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1078722 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1344460 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 2024132 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2733498 2270836 ~ 2276275 (-) True G94786
TU110385 other upstream 312229 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 398969 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1145696 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3875543 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3923499 8936789 ~ 8936818 (-) True G98677

Expression Profile