RNA id: TU112287


Basic Information

Item Value
RNA id TU112287
length 4985
RNA type TUCP
GC content 0.37
exon number 3
gene id CI01000016_08893013_08893496
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8888833 ~ 8894737 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGACGAGCAAAGCATATATAGACATCTCATCGTTACTATTAACATACTTACCAAGCTCACACAAACACACACTGACATACAAACACCACTCGCATTAAATCAAATTCCTGCACTCAGAGGAAGGAAGAGAGAGGAAAGGGAAAGACAGGGATGCTCTTAGCAGGTGCCAAAAACTGAGACGAGAGAGAGAGAGAGAGAGGGATGGAGCAGGACTAAAACATTCAGTCAGGTTTTAGAAGATCCTCAAACTATTATTGTATTTTCTGCAGAATGTTTTTTTGTTTGTACTCCCATGCGTCTCTCTTCTTTATCCGTGTTTGAGTGTATTCATCTAAATCTGTTCATCTAAATCTGTCCATACCGACTCGCATTAGTGGTGTATCTGGGGCCAATATCGCTTGCACCATGCTGTGCTCCTCTGTATTTGTGGTGCTTCTAGTCCTTCTGGCCAATCCGCTGCCGGGCCACACCCGAGCCCTGCACACCCCTGACAAAGCCATGCAGGTCATTGAGCAGTTCCTTGAGCGCTACAATGACCTTTTGACCCTTGATGATCTTGAGAACCTCACGAGTGACCAGTCGGAAGAGCCCATGCAGACCTTTAGCTCTGGGCTGAAGGTTGCAGAGTATCCCAAGTGGATTGACATACCTGTGCAGAGCGAGAATGCCTGGCTCCGCCTCTTGAAGGGGGCTTTGGCCAATCAGAAGCGAGCTCCACCGGACCGGTTGCGGAGGGGATGGAATCGCGGCTGTTTTGGCTTGAAACTGGATCGGATCGGCTCTATGAGTGGCCTCGGCTGCTAATAATGAACTGAGAGATGGACTGAGACGATGAGATGACTGTTGTCCTGCTTAGCTTTAGGTATAGAGGTCATTACCAAACTCTTGTCTGGGACCCTATGAAAAAAAGTTGTACAAAGTTAGGTGGACAAATTCATTATATCGTGTCTTTCAATATACTTATTTTTACATTGGATTTAAAGTAACATGTTGTTTAGCTGTATTTGTATATTTATTTCTTAATGAAGGTAGCAAAGTGTTTTACTTGTTCCTTGAGATGTAGATGAGTTACAATGACCTTCATTTTGATATTCTGCTAGTTTACTAGTCAACAAAGGTTATGGAAAGTAATGGATATGTCTCAAATAGTCTCAAAAATGCATGAGTTATAGAACGTAAACATATACTGCTCACCTTCTGTACTTTTTGCATGAATAAAATTTCTCCCATCATGTTTCTTTTTGCATTCTGCATGTATCTTAATTTCGTTTTTATTACGCTTTTCTAAACCCATGCAGGTTATTATCAGTGTGTTCTCCCACACACTGCAAATCAAGGAGTTCCACCTGTTTCTGCATCATTTTTTTCTTATGGGCTGCAAATATGCAAATTGGAAGAATGTGGCAGGATTTTCACAGTCTTAATCAGCTCCCATTGAACAAGAACACGCAGGCTGACACACATCCACATCCTAGTGGGAAGTCTAGGGTTTAGTGGTGGCTATGTGAGGTGCAAGCTATTTAGTTTTAATTAAGGAACTTAATAATTACTCATGGAAACAATTTATTGAACAATGTGATGTACTATTAACAATTATTGTAAATGGATTTAAACAATTAAAAAAAAAAAATCCTCTTCTAATACTGAGAAGCAATTGGTAGTCTCACATACATCCACAACCATTAAATCATTTGGGAACTGCATGAAAAATCCCTTCAATTCTTACCACTAAATCAGCCTGTGAAATGTATGTGTGGGTGTTAGGATTATAGCTTGTATGAAAAAAACAAAATCCTTACTATGTTTAGCCATAAAATCTTAACTTGAACTACATATTTTATTAGTATAGCAACAAATTGTCTTTCTAAAAACTGAATAGTGTTTTGTGTCTGCCATAAGTAATAAGTATCTGGCACTAACCATGTTTAAAATAATTTGGTGAGCTTATGAAGATCTCTGTCCTCTGTTTTATCCTTTATTTTTTTTTACAGTATATGATTTACCAGTAATAAAGTGATTTACTTTTAATTTACTCTTAAATATCATTAAACTACCCCAAAGTGAGTATAAAGCTATGGTGTTTTTATAGGTGTTCTTTTACTTGCAGTTCTTTACAGGGTCATTTCATCCAAAAAATAAAAAAATAAAATTCTGTCATTACTTATATTAATTTCTTTTTCAAATATAACACAAAAGACGTTATGCAGAATGTGGCAGAATAATGCAGAATGCCCGAGCAATACAGTGAATGTGAATGGGCACCAAAACTGAGAATAATGTACAAAAAGTACCATAAAAGTAGCCCAAACAACTTAAATGTACATATTTAAGCCATGGTCAACCTTTACTTTCACTGGATAGAAAAAAAAGTGAATATTCTAAATAATTTATTTTGTGTTCAACAGAAGAAAGACAGTCATAAAGGTTTGGAATGACACAAGGGTGTCAAAATATTTTCCTTTGGGTACAGCAGAACAAAGAAATGTATACAGGTTTGGAACAACTTGAGGGCGAGTAAATGATGAAAGAATTTTCATTTTTGGTTGAACTATTCCTTTAAAGGCATCCCATTGTACAATACGATATTCAAAGGCCCCTCATATTGACACAGCTTCTCTGTTTCTGTATACTTTAAGCAAAATCGAAGAACGAACCAGTGTGTCGTCGTTTCAAACAAAGTCAGGCCAAAAGTTCATTTTGTGTTCATTTCAAGAGTTCGAAACAGCTTGCCAAATCGAACTTGCTGGAAAAGTTCACTCTGGCTGGTAAACACCTTTGAACTACCATTGGTCTGTGGCAATTATGTAATAGTTAGATGTAGCTCTAAGGCTCCACCTTATTTGACATGGATATCTTCTCCAGTTAATTCTTCTGTTCAGTCCGTTGAGGTCGGACGTTCACAAGTAAAGATATGAACACACTGGAGAGCTGCTTTATAGTAGAAAATGAAGTTGTAATTCTAATTGAACGAGACATTGACACAGTTTTTTTGTTGTTGTTGTTGTGGTTTTTTTTTTTTCATGTTTAATACTGTAAGCTGCTTGTTTTAAAACTATTTATTGTATGAAGTGGTATATAAAGAACTGTGTTTTCTCATCGCTGTCATTTTTTGTTGTGTTTATTTTATTGAAAGGAAAGTGTGCAGCACATATTTAATTTTTTTTTTAAACGCCGCTCTCAGAGGTGTGGGTGGCATCAGGATGTTCGCTAACAGTATACCGCTGCTCATGTATTTCGAACTTCTTTTTACCCCAAAGCAAAGAACGAAATTCACTTCACAGTGATTATATTGGGGCCTTTAGGGTACGTTTACACAATGTACTAAAAATGGAAAAGTTTTATGTATAGATGACAACAAAAATCCACAAAAACAACTAAAAACGCTGTATTGTGCATGCCAGGCCAGTAGTTGGCGATGTCACTTTGTAAAGAAACACTACATGCCTACAGACTGAACACATAATACGCATGCGCATGATCACACAGTTTTTACAAGTTTGTGTTTTTGTAGTTTACATCGTTTTCAAAAACTTGCACTTTGAAGCCCTTTTTCAAAAGTTTGCATTTTCAGGACCCCAAAATGTTGTGTAAATGAACAGCCAAAACTCATAAAAAGTTTTTAGTGTAAAATGGTGTTGTGTAAACACACCCTTATTTTGAGTATTTTCAGTTCCCTGTGTTTCTGTTGTCATAATTATTGACTTTGTTTCCTTTGCTTGTTTGTTTCTATGGTTTAATTGATTATGTTCACCTGTGTTTTGTTTGGTTCCTCATTCATTGTGTTCATACACATCCCTCAGTTTTCAGTTCTACTGCTGCAGCTATATATCCTCATCTCTTGCCTTTGTTTACCATGCCATGACACACATATATAATTCACCACATATTTCCTCCGGTATGTTCTGCTGTAATTATGATAAAGCAGAACTTTTTTAGAGTGTCAATATATTAAATTAATTAACTAGCCACAATTACTTTTGTCATTCCAGAAGTTACTATACTGTTTAATAAAAAAATGTTTGTTATAATTATATTATTAGGACTTACGTTTTTATTAAAAAAAACTTCACACCTTGATATGCTTTTAGAATTATATTAAGTTTTTATTAAGTTATTTTAAAAGTCATCCTGAGGCCAAATTGAAAGCCTCCTGGTTGAGAACCACTACTTTAAAGGAACTTTTCCTAACCCTGATATAACATAAATCTAACTTCAAATCAATCTTCCACCCAATCTTCTGCCAACATTTCCTATTATTAACATCCATATATTTGCTCATTGTAACACATTTGCATAAGTACAGTTTAAATGATGAAAATCAGCTCAGACAGTCTTATAAATGCATTATTTGAATTTGACCACAAGATAGCACTATACCACGAAGCTTAAGACACTAGACTTGTCCCGACAGATCAGATCCTGGACTCTGAGCTCAAACAGCTATGCCACTTTATGGTTAGAAGTTAATATATAACACCCTCACATACCAACGCACAGAGCTAGTAAAGAATCACCCACACTGGAGAACAGCATTTAAACAAACAACTACTTGTCACCAGAGTTTAACAAATCACAAACTGGCCGACAAATCTTCCAGCTGAAGAATCTGAGCTATCTGGGGTGAACCTGGAAATTTGACGTGACAGACGTGCTGTTTGTGTCTCTCAGTGTTACTTTCAGAAGCTTGTCTGATTCTGTCTGAATCATGTGAGTCAGTCGACACAGGGCGAAGTGGATCGTGCAGGTCACTCCACAGAAGCACAAGATAGCTGCAGTGGAAAGGGTGCGGGGTCAGCCTTTGAGTGTTTGTGTATTTTTAGCCTGACCCTGGCGACAGTCCAGCACATTCTCTCTGGTGGCTGGGGAGCAGATAGCAGGGATATGCATACACTATTCTGAGGGGCAGTTGCTGAGAGCTCTTAACCTCTTTTCAAAAGAAGAATGATTTAGAAATTAATATGTACATACAAGTATACATTACAGT

Function

GO: NA

KEGG:

id description
K12336 NPPC; natriuretic peptide C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112335 lncRNA downstream 17317 8871275 ~ 8871516 (-) True G98715
TU112329 lncRNA downstream 71944 8816414 ~ 8816889 (-) True G98709
TU112328 lncRNA downstream 73132 8814845 ~ 8815701 (-) True G98708
TU112334 lncRNA downstream 77601 8810429 ~ 8811232 (-) True G98714
TU112333 lncRNA downstream 79841 8808550 ~ 8808992 (-) True G98713
TU112289 lncRNA upstream 21185 8915922 ~ 8916673 (-) True G98672
TU112275 lncRNA upstream 29773 8924510 ~ 8925768 (-) True G98658
TU112311 lncRNA upstream 163075 9057812 ~ 9058118 (-) True G98694
TU112396 lncRNA upstream 206864 9101601 ~ 9101813 (-) True G98776
TU112398 lncRNA upstream 208486 9103223 ~ 9103458 (-) True G98778
CI01000016_08881761_08888177.mRNA mRNA downstream 596 8881551 ~ 8888237 (-) True CI01000016_08881761_08888177
CI01000016_08871984_08874796.mRNA mRNA downstream 14037 8871984 ~ 8874796 (-) True CI01000016_08871984_08874796
CI01000016_08851218_08869647.mRNA mRNA downstream 19186 8850872 ~ 8869647 (-) True CI01000016_08851218_08869647
CI01000016_08833925_08836497.mRNA mRNA downstream 52336 8833490 ~ 8836497 (-) True CI01000016_08833925_08836497
CI01000016_08800360_08805384.mRNA mRNA downstream 83449 8798407 ~ 8805384 (-) True CI01000016_08800360_08805384
CI01000016_08906943_08914821.mRNA mRNA upstream 11875 8906612 ~ 8914940 (-) True CI01000016_08906943_08914821
CI01000016_08920718_08923668.mRNA mRNA upstream 25728 8920465 ~ 8924048 (-) True CI01000016_08920718_08923668
CI01000016_08926089_08945071.mRNA mRNA upstream 31223 8925960 ~ 8945071 (-) False CI01000016_08926089_08945071
CI01000016_08947581_08961131.mRNA mRNA upstream 51411 8946148 ~ 8961131 (-) True CI01000016_08947581_08961131
CI01000016_09060801_09086358.mRNA mRNA upstream 165785 9060522 ~ 9088199 (-) True CI01000016_09060801_09086358
TU110786 other downstream 2729112 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3470616 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3557987 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 3965429 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 4957782 3865761 ~ 3890326 (-) True G96690
TU112294 other upstream 42052 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 340259 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 361365 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 614885 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 614914 9511357 ~ 9511415 (-) False G98896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020734 True 764 mRNA 0.48 3 NC_007127.7 17204251 ~ 17207754 (-)