RNA id: TU112294


Basic Information

Item Value
RNA id TU112294
length 30
RNA type TUCP
GC content 0.46
exon number 1
gene id G98677
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8936789 ~ 8936818 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGAACGTGATGAGGGAAGATAGTAGTTGGATGACTTGTGGTTGACGGAGTGAGAGATAGAAAGAGGAACAGTGTGACGAAATAGAAAGCTTCGCTGGAAGACCAACATGTTGGGAGAATTTTGATCAAACTGCCACAAAAGAAGAAAAAAGAACAAGATGGACGAGAACCCAGCTGTTCATCAGGAAATGGTCACGACGCCAGAGGAACAGCCTCGTTCTGATGAGCCAAATCCAATGGGCTGCAACAAGTACTGCAGTCTCTTATTGGTCCTCTTTGCCTTCTCTCTCTTTTCAACTACGTTAGGTTTGGCTATCTATTCCCACCTGCAAAAGGAATCACAATGGAAATCAGCTGCACCTCCTTGCCTTTCTCCCGCCTGTCTAAGGGCATCAGAGCATTTTTCTCTTGACATGGATCCCTTTTCTCGCCCTTGTGACTACTTCCTATATGCCTGTGGAGCAGGTGGATCTTCCACCAACAAGGGGAGACTCAGTGGGTTCTCCAATGAAGACAATGGGGAACCGGACAAAAAACGAGAAGTGAGCATGGGTGGATTAGTGAGGATGAGAAGAGAGGCAGATGTTCACGTTAAAAGTGATGGACGGCTAGATAAATTTCCAGACAGACAGACTGCTTTACTGAAAGCCATTAAAGAAATACTAGAGTCTCCAGAGGAGGGTGTTTCTATGAGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112275 lncRNA downstream 11021 8924510 ~ 8925768 (-) True G98658
TU112289 lncRNA downstream 20116 8915922 ~ 8916673 (-) True G98672
TU112335 lncRNA downstream 65273 8871275 ~ 8871516 (-) True G98715
TU112329 lncRNA downstream 119900 8816414 ~ 8816889 (-) True G98709
TU112328 lncRNA downstream 121088 8814845 ~ 8815701 (-) True G98708
TU112311 lncRNA upstream 112583 9057812 ~ 9058118 (-) True G98694
TU112396 lncRNA upstream 156372 9101601 ~ 9101813 (-) True G98776
TU112398 lncRNA upstream 157994 9103223 ~ 9103458 (-) True G98778
TU112292 lncRNA upstream 160165 9105394 ~ 9107226 (-) True G98675
TU112283 lncRNA upstream 211440 9156669 ~ 9158272 (-) True G98666
CI01000016_08920718_08923668.mRNA mRNA downstream 12741 8920465 ~ 8924048 (-) True CI01000016_08920718_08923668
CI01000016_08906943_08914821.mRNA mRNA downstream 21849 8906612 ~ 8914940 (-) True CI01000016_08906943_08914821
CI01000016_08893013_08893496.mRNA mRNA downstream 42096 8892598 ~ 8894693 (-) False CI01000016_08893013_08893496
CI01000016_08881761_08888177.mRNA mRNA downstream 48552 8881551 ~ 8888237 (-) True CI01000016_08881761_08888177
CI01000016_08871984_08874796.mRNA mRNA downstream 61993 8871984 ~ 8874796 (-) True CI01000016_08871984_08874796
CI01000016_08947581_08961131.mRNA mRNA upstream 919 8946148 ~ 8961131 (-) True CI01000016_08947581_08961131
CI01000016_09060801_09086358.mRNA mRNA upstream 115293 9060522 ~ 9088199 (-) True CI01000016_09060801_09086358
CI01000016_09107780_09122244.mRNA mRNA upstream 162180 9107409 ~ 9122290 (-) True CI01000016_09107780_09122244
CI01000016_09129190_09132103.mRNA mRNA upstream 182379 9127608 ~ 9132103 (-) True CI01000016_09129190_09132103
CI01000016_09164404_09171973.mRNA mRNA upstream 219175 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
TU112287 other downstream 42052 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 2777068 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3518572 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3605943 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 4013385 4912708 ~ 4923404 (-) True G97040
TU112296 other upstream 289767 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 310873 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 564393 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 564422 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 564422 9511357 ~ 9511415 (-) True G98896

Expression Profile