RNA id: CI01000016_08947581_08961131.mRNA


Basic Information

Item Value
RNA id CI01000016_08947581_08961131.mRNA
length 3146
RNA type mRNA
GC content 0.46
exon number 9
gene id CI01000016_08947581_08961131
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8946148 ~ 8961131 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAAGATGTCTGACTCCAGTAGCAGCAAGCCCCTTGTGGTAACTTCCTCCGTCTCCCTCAAAGTTACCGCTCCTTCTTTCTACAACCAGCCCAAAAAGTTTGCATCCGTCGCTCCTCCACGGCCCAAAGTACAGATGGCCCCATCACAGCCCTCATCATTTGCAAGCACTGGTGTGATTGGACGAGTTGGAGAGATGCCCCCGCCCCCTTCAGCTGTTTGTGAGGCCCCGCCCCCAGTTGCAGAAGACCTGCACCTCCCTGCACCTCCCGAGGAGTTTATCTCTGTACCTTCTGCCTCATTCCCCCCACCCCCACCACCACCACCTCCTCCTCTCCCTGAGACCGGTGCAGGTGTCAACTCTCAGAGGCTGTTCGAGAAACAGACAAGTTTTGACAGGCAGCTGGGCTCTTTGACCGATATGTTATCAGAGATGGAAACTAGTGGACCTTTCAATCCAAAGTTGCCAAGCCAGTTTTCATCAGCACCAGCTCCGAAGCCAGTAGCACCACCACCAACCGCCCCTAAGCCCGCCCTTTCCTTTCTGCCCCCTCCTGAGCTGCAGGATCGTCCTCCCCCCGCCCCTTGGGCTGAGGAGCTCCGTGCCCGAACACGGCCGGCCAATCAGAGCACAGCCTCTGCCCCCGCTCCTGTACAGTCACTGGCTAAAGGCCCAGCTGTTGCTCCAAAGACCAACTTCCCTCCCAGTCAGCTGAATTCAAATTTTGGTTCCAAAGCAGTTAGCCCTGCACCTTCTGGAGGCGCAAGAGTGTTTAACCATGCCGTTAAAACCCCCGCCCAAAGCTCTTTCCCACCACCTCCTCCTGCAGCTCCTCCTGCCCCTGTTGCTCCACCAGTGAATATTCCCGCCCCCACACCTGCTTTCAATCACTCTGAAACATCTCCCATTCGCAGTCAGCAGAGCTTTGCTCCGCCTTCTCCTGCTGCACCTAAGAAGTCACCCATCTCATCATTCAGCAGACCAGCAGGAAACACTGTTCCACCAAAGGTGTCTGGTTCTGGTGGAGCTCCTCTCACTATGAGGGAGGTAGAAGAGCTGGAGAAAATGACTAAGGACTTTATCAAAGACATGGACAAGCATCCTCCTGTGATCACCTCTCCAGCTACAGAAGTGTGTGGTAAATGTGGAGAAGCTCTGTCAAGATCTCAGCCAGCAGTAAGAGCGATGGAGAAACTCTTCCACTCCCATTGTTTCTGCTGCATGACCTGCCAGCGCCCCCTGCAGGGCATGCAGTTCTACGACCACAACGGCACGCCTCAGTGTGAGGACTGCTACATGAGTTCTCTGACTGTGTGTTCCCGCTGTGGGGAGCGGATCACAGATCGCGTCCTGAAGGCGGTGGGCCAGTGTTTCCATTCCCACTGTTTCCGCTGCACTACCTGCAGCTGCACACTGGAGGGCGCTCCATTCATCACCGATGACAACAACAACCCCTACTGTGTCAAAGATTACCATCGCCGTTTCTCTCCACTTTGCGTGAGCTGCAATGAGCCGATTGTTCCCGACCCTGGAAGTGAAGAGACCATCAGGGTTGTTGCTTTAGAGAAGAACTTTCACCTGAAGTGCTACCGATGTGAGGATTGTGCTCGTCCCCTTTCCATCGAGGCAGATGCTGATGGCTGCTACCCATTGGATGGCAGAATTCTGTGCATGAAGTGCCACGCCCAACGTGCCAAGCAGGCCAAGCAGTGATTGGTGGAAACTTATACAAAACCTAAACCAAATTTAAGACACATAATTGGCTCAGCTTTGAAAATGTATGTGTTGTAATTCTCTCTTCCGTTTCACATTCTCATTTTCCTCATGTTTCCTCAGTCAGTTAGCCTTTTCTCGACAAAGCTCTGCTGCTTTTTCTGAATGGCCTTATTCAGAGCCCAGCCCATAGCTTGCCCTGTTTGTCCTGGCGTCTTTCTGCTAGGGCCTGATGTGTGCGAGCACAACGTTAGTGCCTCCATGTTGACGGTTACATACGACACAATTTTTACCCCTAGATTGTTTGATATGTAAGGTGTCAGAGAAGTGATTTTAGGATTTTTTTTGTGTCTTGAATTTTTACTGTAGTGGCTGACTCTGTGCAGAGGTAATGTACTGCACTGCCGTTTGAACTGCGCAGTTCAGCGAGACGTACAACTCCCAGCATGCCTTTAAAGAAAAAAAACTCAGAACATCCATAAATTGTACCACAGCTGACTACTGAGGCAAGACGTATAGTTTGTATATCCACAGCCATCCATGCACTTTCAATAAGGCTTTTCTGAAACATACATTGTAGTTGATGATAAGGGCTTTTTGTGAAATTGTAGTCACAACAAATGTAAAATAAGCAAAAACAAAGGCAGGGAAAGATGCATGCTTTACTTATAGAACTGCTTACCTGTAAATGAACAAACATTTTAAAAAGCACATTGGTTTTGTCCTAAAACATGTCGAACAAACTATGTGATGATACAGTTAAAGAAGTTTGAATTGATTATCATGCCAGTATCAGTTCAATTGTTTTTCATTCCATATATTGCCAGAGGTATTTAGCGATTGCACAATTGGTAGATTTGACAATTAAGTATTTCCAAAGAAAAGTACATCAATCACTGAGCCTGAGCCTAAGTCTATGACATCGTAGCTAGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTCTGGATTATGGAGAAGATAGTATTATCTACACAGAAAGCTAAAACTAGAGCCTCCAGGTTATATACAGCAAAATTCAACATCACAAAACTAGTTTTTGATTAAAAAAAACAACAGTGTTACTGTAGACAAACTAACATTCTGAGCAAATTGAACTCTTAAATGTTTCTCAGAAATACTTCATTTTTAACAGTCACCATTCCCCGTGATTAATGCACAGAATTCCAGTTTTCCAACATTGACATTTTAGCTTATTTGTCTTTACAATAGCAACTACTGTCTAACTAAGACCACTCATTTTGGCTTTAGGGTAGCACTCGTATTATTTAGAATATTGCATCTGTTTTGCATAGCTCAGAAACATTCATTTTATCTACGAACCTCTGTGTGTTTCTCTTCTTGGCCTCGTCCCTTGACTATATTATGTCCAAGAAATTCTAGTATTTGATGCAATCGAATAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K06273 ZYX; zyxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112275 lncRNA downstream 20380 8924510 ~ 8925768 (-) True G98658
TU112289 lncRNA downstream 29475 8915922 ~ 8916673 (-) True G98672
TU112335 lncRNA downstream 74632 8871275 ~ 8871516 (-) True G98715
TU112329 lncRNA downstream 129259 8816414 ~ 8816889 (-) True G98709
TU112328 lncRNA downstream 130447 8814845 ~ 8815701 (-) True G98708
TU112311 lncRNA upstream 96681 9057812 ~ 9058118 (-) True G98694
TU112396 lncRNA upstream 140470 9101601 ~ 9101813 (-) True G98776
TU112398 lncRNA upstream 142092 9103223 ~ 9103458 (-) True G98778
TU112292 lncRNA upstream 144263 9105394 ~ 9107226 (-) True G98675
TU112283 lncRNA upstream 195538 9156669 ~ 9158272 (-) True G98666
CI01000016_08926089_08945071.mRNA mRNA downstream 1077 8925960 ~ 8945071 (-) False CI01000016_08926089_08945071
CI01000016_08920718_08923668.mRNA mRNA downstream 22100 8920465 ~ 8924048 (-) True CI01000016_08920718_08923668
CI01000016_08906943_08914821.mRNA mRNA downstream 31208 8906612 ~ 8914940 (-) True CI01000016_08906943_08914821
CI01000016_08893013_08893496.mRNA mRNA downstream 51455 8892598 ~ 8894693 (-) False CI01000016_08893013_08893496
CI01000016_08881761_08888177.mRNA mRNA downstream 57911 8881551 ~ 8888237 (-) True CI01000016_08881761_08888177
CI01000016_09060801_09086358.mRNA mRNA upstream 99391 9060522 ~ 9088199 (-) True CI01000016_09060801_09086358
CI01000016_09107780_09122244.mRNA mRNA upstream 146278 9107409 ~ 9122290 (-) True CI01000016_09107780_09122244
CI01000016_09129190_09132103.mRNA mRNA upstream 166477 9127608 ~ 9132103 (-) True CI01000016_09129190_09132103
CI01000016_09164404_09171973.mRNA mRNA upstream 203273 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09185530_09205841.mRNA mRNA upstream 224273 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
TU112294 other downstream 919 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 51411 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 2786427 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3527931 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3615302 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU112296 other upstream 273865 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 294971 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 548491 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 548520 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 548520 9511357 ~ 9511415 (-) True G98896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020743 True 1976 mRNA 0.51 10 NC_007127.7 17302452 ~ 17347727 (-)
bowfin (Amia calva) AMCG00004704 True 3996 mRNA 0.54 10 CM030121.1 56897603 ~ 56910267 (-)
tiger barb (Puntius tetrazona) TU120626 True 2130 lncRNA 0.44 2 NC_056709.1 12817753 ~ 13057247 (-)
mexican tetra (Astyanax mexicanus) TU120626 True 3177 TUCP 0.44 7 NC_035906.1 9894825 ~ 9901700 (-)