RNA id: CI01000016_09060801_09086358.mRNA


Basic Information

Item Value
RNA id CI01000016_09060801_09086358.mRNA
length 4784
RNA type mRNA
GC content 0.41
exon number 21
gene id CI01000016_09060801_09086358
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9060522 ~ 9088199 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGTGTGATATGCTCTGTGGAAGAATGTAAAATCTCTATACAGTATGTTCAGGACTGCAGCTACACAAGAGGTGGGTTTGCATTAGTCTCTATTATGGATGCATGTCATAGAGCACATTTTGAAAGTATTACTAATTAGAATGAAAGTGAACAAGAAAGCTTAATTCTTATTATTACTAATTAGTATTACTTTCAGTAATTACTTATTAATAATTAAGATGACATTTACTTTAATAAACACACACGCACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATACACACACACACACATACATACATACACACATACATACACTTAACAGATCATTATTTAATGTACTTATTTAATTATATGTTCATACCATTAGTAATTAATATGTCCTTAGTTATTAATATCCTTGTTTTACCCTGCCATTAACATTGAATGTACTGACTACTGGTTTACTATATAACAATGTTAATAATTAGATTTTTTTTAATCGCTGTCAATTGTTAGTAAAAGAGAATGATTTTAATTTGTGTGCTGAAATTAGTTGAGTTGAAATTAATATACACTACCGTTCAAACGTTTGGGATCGGTACGATTTTTTTAAATGTTTTTAAAATAAGTCTCTTATTCTCATTATTTGACTTAAAAAAACAGTAATATTGTGAAGTATTACAATTTAAAATCACTGTTTTCTATTTGAATATATTATGAAATGTAATTTTTTTTTCTGTGATGTCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGAGTCACATGATCCTTCAGAAATCATTTTAATATGCCGATTTGATGCTCTAGAATCATTTCTGATTATTATCAATATTGAAAACAGTTGTGTACATTTTTTTTTTTTTTTTTTTCAGGATTTTTTGATGAATAGAAAGTTCAAAAGAACAGCATTTATATGAAACCGTTTATATGAACAGTTTATATTATTTATATGAAAAGTTTGGGGTCAGTAAGATTTTTTTTTTTTAAAGAAATTAATACTTTTATTCAGCAAGTATGCATTAAATTGATCAAAAGTAACAATAAATACATTTATAATGTTACAAAATATTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCATCAAATAATCCTGAAAAAAAAATGTTTTTAACATTGGTAATAGTAATAAATGATTCTTGAACAGCAAATCAGCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAATAATGATGCTGAAAATTCAGCTTTACCATCACAGGAATAAATTCTGTTTTAAAATGTATTAAAAGAGAAAACACAGTTATTTTAAATTGTAATAATATTTCACAATATTACTGTTTTTACTGTATGTGTAATCAAATTAATGTAGCATAAGAGACTAATTTTACAAACATAAAAATCTTACCGATCCCAAACGTTTGAATGGCAGTGTAAATTCTGGCCTACATTTTGCTGTCTTATCACAACTTCCAGAAAAGTTCAGAATTTGTTCTTGGGTTTTGCATTTGGAACACTGTATTTTAAATGTAACTTATTTATATAATTTAGTGATCAGGTCTTAATGATAGTATAAATGTTTTGCTGACTGATAAAGCTAATAATTAAATCCCCCAAATTTGTTGGCCATTCATGATGTCATTTATCTTATTTTAATTCTAGCATGCTTTTATTTATTTATATATTTATTTCACACTTTACATATTGAACTAAATACATCAAATACAAACACTGAATATTTTGAGTCATACATACTGTATACATTGAGCATTTCTTGTTTTTGAGTGGGCATGAGGCGGCTGAATCTGATCCCTTCAGTCTCGCACCATGTGGGGTCTGTGCTGCTCGAGAATCTATATGGGGAATATCGGGAGCAGCTGGGTAATGTTGCCAGACGGGAGGCCACACGTCTGTTGACTGAAAGGCAACGGAAGAGGCATGCCGGCAATGCCAAGGCAACCAGGAGAGGCCATGGCCGAGCACATCATGCCAGCCTGGATGTGGGGCCCATGACACCAGGTTTAAGCCCCTCCTCGTCTATAAAGAAGCCACGGCCCTATTCCAAATGCCAGGACTGTTTAGCCCGAATCCAGAGGTATATTGTGACAAAGCTGGGGGAGGACTGGATCTTCTTGGTTCTTTTGGGTCTCACTATGGCTCTGGTTAGCTGGAGCATGGACTATGCCAGTGCCAAGAGTCTACAAGCATATAAGTGGATGTACGGAGAGCTGAAAGGGAATGTGGCTCTGCAGTATCTGGCCTGGGTCTCATATCCTATCATCCTCGTCGTCTTTGCATCCCTCTTCTGCCATTTGGTCGCTCCACAAGCTATAGGCTCTGGGATCCCTGAGCTCAAGACCATCCTCAGAGGTGTGGTGTTAAAGGAGTATCTGACGCTCAAAGCATTTGTGGCTAAAGTCATTGGTCTTACAGCTGGTCTAGGCAGTGGTATGCCCATCGGAAAGGAGGGTCCTTTTGTGCATATTGCCAGTATTTGTGCGGCAGTGCTGAGCAGGGTCATGTCCATCTTCACCGGTGTGTATGAGAAGCTGCTGACCTTAATCGCTGATCTAAGATCAAGTTACCTTTCATTGGCATATAAATTACCACTCCACACCACAGCCATCACAGGTGTGTTGTTCAGTATTGAGGTCACGTCAACATATTTTGCAGTGAGGAATTACTGGAGAGGATATTTTGCTGCCACATTCAGTGCCTTCATTTTCCGAGTGCTGTCAGTGTGGAACAAAGATTCCGTCACGATAACAGCACTGTTTCGTACAAACTTCCGTATGGACTTCCCTTTTGACCTGCAGGAACTGCCAGCTTTTGCAATAATCGGCCGGTTGATTTACCCTGGTGCCGTGACACTAATTATATCCTCCTTCACATTTCCTCCGGGCTTCGGCCAGTTCATGGCTGGAGAGCTGATGCCCAGAGAGTGCATTAATTCACTATTTGATAACTTCACTTGGACAAAGATCTGGGGTTCACCGGCTCCTCCTGGATTGGGTCGCTCTGCTGCTTGGCTCCACCCACAAGTCAGCGTCTTCGTTATCCTCCTCCTCTTCTTTGTCATGAAGTTCTGGATGTCTGCAGTCTCTACAACAATGCCGGTCCCTTCTGGAGCTTTCATGCCTGTTTTTATATTGGGGGCAGCAGCTATGACAGGAGCTGTCACACACACTGTTTCAACTGCAGTGATCTGTTTTGAACTGACGGGTCAAATCTCACACATCCTGCCCATGATGGTGGCCGTGATTCTCGCCAACATGGTGGCACAGGGTCTACAGCCTTCTCTTTATGACTCCATCATTCAGGTCAAAAAGCTGCCCTATCTCCCAGAGCTCGGCATTGGCCACATCAGTAAATATAATATCTTTGTGGAAGACATCATGGTGAAGAAAATAAAGTTTCTATCACCTCAGTCCACTTACAGAGAGCTGAAAGAACTCCTGGAGTCCACGTCTCTCAAAACCATCCCGCTCGTTGACTCCAAAGAGTCAATGATTCTGTTGGGCTCAATTGAGAGATGTGAACTTCAGGCCGCCTTCGATTGGTGGCTCTCAGCCGAGAGGCGGGTTTATACCCGAGGTGAGGGCGTGCCGAGCCCGGGGTCACCGGTCAGCTGGCAGTCCTTCGCCTTCGTGGATGAGGAGGTTGGAGAGGAGAATGGAGACAAGGGTAACACAGTCTCTGAAGAGTGTAACGGCCCACTGGGGTCCTCTAAAACCACAGACATCTCCACTAATCACACCACATCCGGTGCTCTGCAGTCCATGAGGAGGACACTTCATCGTCTTTTCTCCTCATCTTCCTCATCAGGGCAGACTGAGCCAGAGAGCCCTGCAGCTCCTCCTGTAGCTGATAACATGACTCCTGAAGAGATCAAAGCCTGGGAAGAGGAAGAGCTGGATAAGCCGATTGACATTGATCAGATCCGTGTTGACCCCTCACCTTTTCAGCTTGTTGAGAGAACATCTTTGCATAAGACTCACACCCTGTTCTCTCTGCTGGGTCTCAGTCATGCATATGTAACCAGTATTGGTAAACTGATTGGGGTGGTCGCACTAAAAGAGCTCCAGAAAGCAATCGAGGGTTCGACTCGTAGCGGAGTGCGACTGCGTCCCCCTCTGGCCAGTTTCAGAGACGCCAGACGCAAGGCCAAAAAGCCTTCTCATTCCCCTTCCATCCAGTCCTCTCCCACACGGGACAGAGAGCTGTGGAGCGAGGGAGTGAAAAGAGAGACTAAAGACGAGTCAGCTGGTAGTTGTATCCAGACAGCAGAGAAAGAGTGTGATATCGCCATGGGCAACAGCAACAGAAGTACCGTCAGCACCTCTCAGGAGCAATTGCCTTCCCCTTCTTCTTCCACACTTCCTCTGTCCTCTCTTCATTCTGTGCCTGAAGCAGAGGTGGATGCTGATAGAGAGAGTGATGAGGAGCCTTTATAGGTCTATTGTTTTGTAATTTACTCAAATTCAGCCCTCCAGGGGGAGGCAAACCAAATTATGGTGCTGCCTTTGAGCCCAGCATGGGCCGTCGGACTTGTTGGCTGATTTTCTACTCTCTGGACAGGACTCTTTCTTTCTAGATGTTTTTATTCAGTTAAGTTTCTTTTGCTGTCTATTACATTTGTACATATGGACAGTCGGTCTGACACATTTCACTGAATATTGACAATCCATCCCAGTGTTTGTCTGCTGTACTTCATATTATATCTCTGTAAAAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05010 CLCN1; chloride channel 1, skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112311 lncRNA downstream 2404 9057812 ~ 9058118 (-) True G98694
TU112275 lncRNA downstream 134754 8924510 ~ 8925768 (-) True G98658
TU112289 lncRNA downstream 143849 8915922 ~ 8916673 (-) True G98672
TU112335 lncRNA downstream 189006 8871275 ~ 8871516 (-) True G98715
TU112329 lncRNA downstream 243633 8816414 ~ 8816889 (-) True G98709
TU112396 lncRNA upstream 13402 9101601 ~ 9101813 (-) True G98776
TU112398 lncRNA upstream 15024 9103223 ~ 9103458 (-) True G98778
TU112292 lncRNA upstream 17195 9105394 ~ 9107226 (-) True G98675
TU112283 lncRNA upstream 68470 9156669 ~ 9158272 (-) True G98666
TU112408 lncRNA upstream 86983 9175182 ~ 9175879 (-) False G98783
CI01000016_08947581_08961131.mRNA mRNA downstream 99391 8946148 ~ 8961131 (-) True CI01000016_08947581_08961131
CI01000016_08926089_08945071.mRNA mRNA downstream 115451 8925960 ~ 8945071 (-) False CI01000016_08926089_08945071
CI01000016_08920718_08923668.mRNA mRNA downstream 136474 8920465 ~ 8924048 (-) True CI01000016_08920718_08923668
CI01000016_08906943_08914821.mRNA mRNA downstream 145582 8906612 ~ 8914940 (-) True CI01000016_08906943_08914821
CI01000016_08893013_08893496.mRNA mRNA downstream 165829 8892598 ~ 8894693 (-) False CI01000016_08893013_08893496
CI01000016_09107780_09122244.mRNA mRNA upstream 19210 9107409 ~ 9122290 (-) True CI01000016_09107780_09122244
CI01000016_09129190_09132103.mRNA mRNA upstream 39409 9127608 ~ 9132103 (-) True CI01000016_09129190_09132103
CI01000016_09164404_09171973.mRNA mRNA upstream 76205 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09185530_09205841.mRNA mRNA upstream 97205 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09212039_09212358.mRNA mRNA upstream 123798 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
TU112294 other downstream 115293 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 165785 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 2900801 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3642305 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3729676 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU112296 other upstream 146797 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 167903 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 421423 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 421452 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 421452 9511357 ~ 9511415 (-) True G98896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020744 False 3816 mRNA 0.43 23 NC_007127.7 17477152 ~ 17541890 (-)
rainbow trout (Oncorhynchus mykiss) TU11904 True 201 lncRNA 0.38 1 NC_048565.1 11290488 ~ 11290688 (+)
striped catfish (Pangasianodon hypophthalmus) TU11904 True 465 lncRNA 0.40 1 NC_047595.1 18087021 ~ 18087485 (-)