RNA id: CI01000016_09107780_09122244.mRNA


Basic Information

Item Value
RNA id CI01000016_09107780_09122244.mRNA
length 1533
RNA type mRNA
GC content 0.48
exon number 9
gene id CI01000016_09107780_09122244
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9107409 ~ 9122290 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTATTATGTCTGTCATTTCTTTCTTTTTAATTTAGTGATTCATCATGCTGGGAGAGTGTGGCATGAAAAAATGGGAGAGACTAGCACTCAGGAAGAACTCGGTTACGATTCTGCAGGACTTAGTGGTGGATGATCTTCTGATCCAGTGTCTGCAACAAGATGGAATCCTCACAGACAGCATGGCAGAGAGCATTATGGCTGAATCGACGTCCCAGGGCAAGAGTAGCCATTTATTGCGTCTTTTGCCCAAACGTGGTCCTCGGGCATTTAGCAGCTTCTGTGATGCTCTTAAGGTGACAGAGCAACAGCACCTCTATGAACTGCTTATGGACTTCACAGAGAAAGATAAAAGCTTTTCAGAGCCCTCACTGACTCGCCCGATTCAGGAATGTGTGATACCTGCGAAAAGAGCCAGGACTCATGAGTCAGTGGAGATGTGTTTAGATGCCGACTCTCCCATGACCACAGCTGTACTTCCCTGCACACCGGAATTTTACCAGTCCCACAGATCACAGGCCTACCCGATGCGCTCATGCCCGCGAGGACTGGCCCTGGTGCTGAGTAATGTGAGGTTTGACTCTGCAAACACTGATTTAGACATCCGGAGGGGAGGGGAGGTGGATGAGGAGACGCTGAGGAGACTTTTCACAGAGCTGGATTTCACAGTCAGCCTGCACAAAGACCTAACAGCAGAGGAAATGCGTGGGTGCCTAGAACAGTTTGCCCAGCGGCAGGAGCATGCAGATTATGACTGCGCTGTTGTGTGTTTACTGTCTCATGGTGTTGAGGGATCTATCTACGGGACCGACGGACAGCCGCTGGAGTTGGACTGGGTGTTTGGGGTTTTTGATAACGCCCGCTGCCCTCTGCTCCAGAATAAGCCAAAGATGTTCTTCATTCAGGCTTGTCGAGGAGGCACTGCTGCGATGAGAAACACCAAGAAAGGGTCCTGGTTTATTCAGGAACTGAACACTGCCATCAGACAGAGAGCCAACGACACACACCTGTCAGACATACTTGTGCAGGTGAACGGTCGAATTAAAAGCAGAGAGGGATATGCACCTGGTTCAGCCCATCATCGCTGTAAAGAGATGTCGGAGTTCACCAGCTCCCTCTGTAAAGACCTCTACCTCTTCCCTAAGTACTATCCCAGCAACTAGACACGTGCACGCACTCCCCATGCACAAAGCGCATGCAGAACACACTGTCCTCAGAACTGATTTTGATGCAGTAGCGGGAGCTCAGTGCACACGTGTGTACATCCATCTCCCGCTCTAAGACAAACACAGAGTCATGTAAATCTGCTTAGACCCATTCCATGTGTCATCTGTTTCACATTCCTCAGCACAATGACAGGTTCATTATGATGCGTGTGTACACTATTTACCATGGATTTGCTAAGATCAGTTTTTAATCGTAAGAACTTCATCTTCTAGTGTGCACTAGAAAATATTAAGAGTTCATTCTCCATATCTTTGTTTGCCTTGCTCTTTCTCTTTTTTTTTAATCCATGAAATTAGGAAAGAGTAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02186 CASP2; caspase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112292 lncRNA downstream 183 9105394 ~ 9107226 (-) True G98675
TU112398 lncRNA downstream 3951 9103223 ~ 9103458 (-) True G98778
TU112396 lncRNA downstream 5596 9101601 ~ 9101813 (-) True G98776
TU112311 lncRNA downstream 49291 9057812 ~ 9058118 (-) True G98694
TU112275 lncRNA downstream 181641 8924510 ~ 8925768 (-) True G98658
TU112283 lncRNA upstream 34379 9156669 ~ 9158272 (-) True G98666
TU112408 lncRNA upstream 52892 9175182 ~ 9175879 (-) False G98783
TU112403 lncRNA upstream 53141 9175431 ~ 9175917 (-) False G98783
TU112405 lncRNA upstream 53141 9175431 ~ 9175879 (-) False G98783
TU112404 lncRNA upstream 53246 9175536 ~ 9175917 (-) False G98783
CI01000016_09060801_09086358.mRNA mRNA downstream 19210 9060522 ~ 9088199 (-) True CI01000016_09060801_09086358
CI01000016_08947581_08961131.mRNA mRNA downstream 146278 8946148 ~ 8961131 (-) True CI01000016_08947581_08961131
CI01000016_08926089_08945071.mRNA mRNA downstream 162338 8925960 ~ 8945071 (-) False CI01000016_08926089_08945071
CI01000016_08920718_08923668.mRNA mRNA downstream 183361 8920465 ~ 8924048 (-) True CI01000016_08920718_08923668
CI01000016_08906943_08914821.mRNA mRNA downstream 192469 8906612 ~ 8914940 (-) True CI01000016_08906943_08914821
CI01000016_09129190_09132103.mRNA mRNA upstream 5318 9127608 ~ 9132103 (-) True CI01000016_09129190_09132103
CI01000016_09164404_09171973.mRNA mRNA upstream 42114 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09185530_09205841.mRNA mRNA upstream 63114 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09212039_09212358.mRNA mRNA upstream 89707 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
CI01000016_09224593_09226660.mRNA mRNA upstream 102177 9224467 ~ 9226660 (-) True CI01000016_09224593_09226660
TU112294 other downstream 162180 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 212672 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 2947688 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3689192 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3776563 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU112296 other upstream 112706 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 133812 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 387332 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 387361 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 387361 9511357 ~ 9511415 (-) True G98896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020749 False 1800 mRNA 0.44 10 NC_007127.7 17555164 ~ 17578347 (-)