RNA id: CI01000016_09224593_09226660.mRNA


Basic Information

Item Value
RNA id CI01000016_09224593_09226660.mRNA
length 852
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000016_09224593_09226660
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9224467 ~ 9226660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGTTTCCTGCCATGCTCTTGGGTTTTGTCTTGGTGTGTAGTCTGGGCATCGCTGGCTACATCCATACCAGACGGAAGCAGGAACTGCAACTGAATAAACAGGCTTCATTTCTAGATATTAAGTTCAGAGTGACCAGGGATGTTCTGGGAGAATACCAAGATCAGCTGATCCAGTCCAACGCACAGATAGAAAATACCAAGAAAGAGATGGATACTCTAACCAAAGACCTGTCCCAAGTTAAGACCGTAGTAGAGCAGAAAAAGAGTGACGCTGCTGCCTGTAATGGAGACAAGAAACGATTCACAGATGAAATTGCTGCTTCAGAGACAGAGAAGAAACATATCCAGGATGAGATGGTCAAGGAAAAGTCCCAATGGGAAACTGAGGTTGCTTCTCTTAAAAAACAACTGGAGCAGCAGAGCACACTTTGCAAGTACATCGACAAGACCTCCGAGGAAGGAAAGAAACTGTGTAACATAATTGACGAGCCACAAAAGCCAGAGGCAAAGCCCAATGAACCAGCAGCAAATGAAGCCAAAGCTGAACAACCGAAACCTGAGGGGAAAAAAGCTGAAGCGCCAAATGCCGAAGCGCCAAATGCCGAACAGCCAAAAGCTCAAGCGTACATGCCCGCTTGTATCGACCAATGGGAAAGCTCTGACCCTCTTACTGTCGCTCCTAATTATCCTCGCTCTATTACCCCACTTACTATCTTTATGTAGTCCTGACAACAACAAGCTTAACCAATCAGAGCCTTCAGTGGAGCAGTTATGAGTTGCTCTTCAGTGTCCTTTGTTATAGGTTTTGGTTTTATGCTGAAATATTGTGATGTTTGATGTAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112403 lncRNA downstream 48550 9175431 ~ 9175917 (-) False G98783
TU112404 lncRNA downstream 48550 9175536 ~ 9175917 (-) False G98783
TU112408 lncRNA downstream 48588 9175182 ~ 9175879 (-) False G98783
TU112405 lncRNA downstream 48588 9175431 ~ 9175879 (-) False G98783
TU112406 lncRNA downstream 48588 9175536 ~ 9175879 (-) True G98783
TU112300 lncRNA upstream 7244 9233904 ~ 9234433 (-) True G98683
TU112309 lncRNA upstream 28291 9254951 ~ 9255328 (-) True G98692
TU112414 lncRNA upstream 28975 9255635 ~ 9255882 (-) True G98789
TU112465 lncRNA upstream 84331 9310991 ~ 9311210 (-) True G98831
TU112468 lncRNA upstream 86915 9313575 ~ 9314005 (-) True G98834
CI01000016_09212039_09212358.mRNA mRNA downstream 11297 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
CI01000016_09185530_09205841.mRNA mRNA downstream 18433 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09164404_09171973.mRNA mRNA downstream 49709 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09129190_09132103.mRNA mRNA downstream 92364 9127608 ~ 9132103 (-) True CI01000016_09129190_09132103
CI01000016_09107780_09122244.mRNA mRNA downstream 102177 9107409 ~ 9122290 (-) True CI01000016_09107780_09122244
CI01000016_09251602_09253351.mRNA mRNA upstream 24752 9251412 ~ 9253351 (-) True CI01000016_09251602_09253351
CI01000016_09376209_09382250.mRNA mRNA upstream 149549 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09384358_09401878.mRNA mRNA upstream 157502 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09410080_09416286.mRNA mRNA upstream 183246 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09475913_09487996.mRNA mRNA upstream 248337 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
TU112294 other downstream 279238 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 329730 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 3064746 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3806250 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3893621 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU112296 other upstream 8336 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 29442 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 282962 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 282991 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 282991 9511357 ~ 9511415 (-) True G98896

Expression Profile