RNA id: TU112534


Basic Information

Item Value
RNA id TU112534
length 59
RNA type TUCP
GC content 0.44
exon number 1
gene id G98896
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9511357 ~ 9511415 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCGTTCACACTCAGAGAGGAGATGTGGTCAGGATAGAACAGCGCTCCTTTTCTTGCGTACACCAAATTGCGTTTTTACCCGAAACCTCTTGTTGCGTCCCGCGCGCGTTTGTTGTTGTTTTTTTCCCCTTCTCGTTTAGCTCTTTGTGGTTTTTATTTATTACAATGAAGGCCAGCGCACCAGTTCGCCCTCATAAGGTTTCTTCTGGCTGCAGTCAGCTCTCCTTGCGTTATTTGACGGAGCCCAGCCGATGCAAAATGGAAGAGGAGGATCTTTTCTGTCTGCAGTACGACATGAACGACTGTTACAGCCGACTCAAGCGCCTGGTGCCCACTATTCCGCAGGATAAGAAAGTCAGTAAAGTGGAGATCCTCCAGCATGTCATTGACTATATCCTGGACCTGCAGCTGGCGTTGGAGACGCACCCGGCTCTCCTGAAACAGACGAGCCCACCCGCCTCCACACGGACCCCTCTCACACAAATCAACACAGAGCAGAGGACGACGGGTGTCAATAAGGAAGACTCAATTTTGTGTCGCTGAAATGTTGCACACCGGTGTGCACTGAACCCATCCAAAGCCAAGCCCAGCTTCACCAGGGAATCCAACACACATCAGGCCCAATCGCAGGGGAGCAGCACTGAAACTAATAGCTACTAAATCATAATATGTAAACATTTTAACGTCAGCTGTCAAAGATGCGGTGAAGCCAGCCAGATTTCTCTTGTGCCCATTCTGTTCTCTCTCCGTGGGGGAAATGCTGAATTTGGACAGAGAATCCAATCCCCCCTCCTTCACACCTCTGAAATTTCAATTTTAAAGACATCTCAGATAAAAACCTGCATCTAATTTTACTAAAAACCATCAGACTGTAAAGCTTTATGAATCAAAATGAAAACATCTGACATCTATTGTTAGGTGATTTGTGCTGAACAGGGATTTCCCTGCTGTTTAATATTGTAAAGAACTACGATAAGTGTTGACTTAAATAATGCTGTACATAACAAGGAGGATGTTCTATAAATGTATGTGTAAGAGAATATATGTTCAACCAGCTGATTGTAATTATTCTAAAATATTTTTTATCAAAAATGTTTCGTTCTGTAAATATTGTGTTTTCACATAAGTGTAGTGAATGATTACATGATGTTCTGCTAATAAAGGTCTCACATCATAAACTGATTTGCTTGTGCTCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112524 lncRNA downstream 15683 9493643 ~ 9493939 (-) True G98887
TU112522 lncRNA downstream 19816 9489565 ~ 9489806 (-) True G98885
TU112515 lncRNA downstream 28995 9480394 ~ 9480627 (-) True G98878
TU112509 lncRNA downstream 33829 9475533 ~ 9475793 (-) True CI01000016_09475913_09487996
TU112490 lncRNA downstream 112103 9356362 ~ 9397519 (-) True G98853
TU112537 lncRNA upstream 1403 9513765 ~ 9513998 (-) True G98898
TU112540 lncRNA upstream 6017 9518379 ~ 9518655 (-) True G98901
TU112545 lncRNA upstream 10666 9523028 ~ 9523298 (-) True G98906
TU112553 lncRNA upstream 22160 9534522 ~ 9534762 (-) True G98914
TU112732 lncRNA upstream 28663 9541025 ~ 9541287 (-) True G99078
CI01000016_09475913_09487996.mRNA mRNA downstream 21330 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09410080_09416286.mRNA mRNA downstream 91855 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 107744 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 127372 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09251602_09253351.mRNA mRNA downstream 256271 9251412 ~ 9253351 (-) True CI01000016_09251602_09253351
CI01000016_09638800_09651752.mRNA mRNA upstream 126230 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 141140 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 226651 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 445560 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 513140 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
TU112308 other downstream 252011 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 269693 9234996 ~ 9239929 (-) True G98679
TU112294 other downstream 564393 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 614885 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 3349901 6158986 ~ 6159721 (-) True G97341
TU112845 other upstream 301999 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 538806 10051168 ~ 10052389 (-) True G100190

Expression Profile