RNA id: TCONS_00015976


Basic Information

Item Value
RNA id TCONS_00015976
length 275
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_007328
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 27530421 ~ 27537360 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCATTTATAGCCAATAAAGATATACTTACGTAAGCGGACCAATGAAAGCCCTGCTATTTGACCCGGAAAGCCGTGTGTAAAGCAGTGCAGGCAGCTAGAAGAACGCAACATAACAAACTCTGCTCTCACGTTTGAAGAAACTCATGACACACCTCCTTCCTTGCTCTCCGATAGTGACGTTGACAAGCACCGCCTCCTGACATCGCTTTCTTACAGTCTGAATAATGGCGTGGGATTGCAGGTATTGGacataatcataatatttttgCAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00014437 lncRNA upstream 812686 26715651 ~ 26717735 (+) True XLOC_007324
TCONS_00015975 lncRNA upstream 828069 26634727 ~ 26702352 (+) True XLOC_007323
TCONS_00014435 lncRNA upstream 936765 26590914 ~ 26593656 (+) True XLOC_007322
TCONS_00016224 lncRNA upstream 1024937 26504179 ~ 26505484 (+) True XLOC_007320
TCONS_00016222 lncRNA upstream 1177779 26272102 ~ 26352642 (+) False XLOC_007318
TCONS_00015977 lncRNA downstream 33612 27564398 ~ 27584043 (+) False XLOC_007329
TCONS_00015978 lncRNA downstream 33612 27564398 ~ 27705228 (+) False XLOC_007329
TCONS_00015979 lncRNA downstream 33612 27564398 ~ 27715424 (+) True XLOC_007329
TCONS_00015980 lncRNA downstream 47165 27577951 ~ 27581776 (+) True XLOC_007330
TCONS_00015981 lncRNA downstream 189600 27720386 ~ 27772249 (+) False XLOC_007331
TCONS_00014441 mRNA upstream 686824 26796684 ~ 26843597 (+) False XLOC_007327
TCONS_00014445 mRNA upstream 687012 26805388 ~ 26843409 (+) True XLOC_007327
TCONS_00014444 mRNA upstream 699577 26805388 ~ 26830844 (+) False XLOC_007327
TCONS_00014443 mRNA upstream 724702 26796917 ~ 26805719 (+) False XLOC_007327
TCONS_00014440 mRNA upstream 734087 26759332 ~ 26796334 (+) True XLOC_007326
TCONS_00014446 mRNA downstream 750958 28281744 ~ 28385565 (+) True XLOC_007333
TCONS_00014447 mRNA downstream 901951 28432737 ~ 28437426 (+) True XLOC_007334
TCONS_00014448 mRNA downstream 908161 28438947 ~ 28459446 (+) False XLOC_007335
TCONS_00014449 mRNA downstream 912177 28442963 ~ 28457955 (+) True XLOC_007335
TCONS_00014450 mRNA downstream 933950 28464736 ~ 28469244 (+) True XLOC_007337
TCONS_00014442 other upstream 699855 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014405 other upstream 3172904 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014372 other upstream 4157949 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014367 other upstream 4374765 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014351 other upstream 5211420 22316234 ~ 22319001 (+) False XLOC_007271
TCONS_00014490 other downstream 2882991 30413777 ~ 30424854 (+) False XLOC_007352
TCONS_00014495 other downstream 3057181 30587967 ~ 30620257 (+) False XLOC_007356
TCONS_00014499 other downstream 3210202 30740988 ~ 30741116 (+) True XLOC_007359
TCONS_00014522 other downstream 3979155 31509941 ~ 31519774 (+) True XLOC_007368
TCONS_00014524 other downstream 4002297 31533083 ~ 31533220 (+) True XLOC_007370

Expression Profile

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