RNA id: TU106015



Basic Information


Item Value
RNA id TU106015
length 592
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G93161
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 460440 ~ 463979 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATATTTCACTTTGCTGATCAAAAACAGGAAATGCAAGAAAGATCTCTCACCTAGATAATCAACCAGAATCCACTCATCGTCCTCCTCCTTCTCGTTGAAGTCTGGATCCACAGGACATCCACTGCCCTCCTCCAGGGAGTCTCCAAACAAGATGCTGGTGAACCTCTGGAACATGTTTTTGTCCCGGGAAGAGGCGTGAGGCTGGACAGTCCTGCTGGGAGTGGGTGAGGGCTGGGCTCTTTGGTCATCAGCTGCGGGAGCCGCTCACTGAGATCTTGGTAAAGGTGCTGAAGTGCATTAGTTACTCCTTCTCAGCTGAGGAACACCTGATGAAGTTCAGCCATTGCTCTTGTTGATAGTGCAAAAACAGACCTGCGGCAAAAAGTAATGTAAACAGGAAGAGGGTTGGCTTCAAGAACAAAAACAGATCACTTCAAGTGGTTGAGGTAGATTATTTGTCGTGGGATATATAAAAATATATAAATACAATTCTTCCTGGAAGAAATTAAAAGTTTCTGGACCCTTTAGTTCGGAGTTTTGCAGTCTGTACTTTCTCGTTTCTCCTCCGAGGTCTCAACTGCTCCCTTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106007 lncRNA upstream 3433 450613 ~ 457007 (+) True G93157
TU106091 lncRNA upstream 92261 309289 ~ 368179 (+) True G93224
TU106082 lncRNA upstream 175590 284593 ~ 284850 (+) True G93216
TU106081 lncRNA upstream 176007 284200 ~ 284433 (+) True G93215
TU105998 lncRNA upstream 208866 182328 ~ 251574 (+) True G93149
TU106157 lncRNA downstream 153453 617432 ~ 617962 (+) True G93290
TU106167 lncRNA downstream 170123 634102 ~ 634319 (+) True G93300
TU106168 lncRNA downstream 175682 639661 ~ 639878 (+) True G93301
TU106177 lncRNA downstream 200025 664004 ~ 664235 (+) True G93310
TU106180 lncRNA downstream 202386 666365 ~ 666745 (+) True G93313
CI01000016_00318676_00446341.mRNA mRNA upstream 14099 318676 ~ 446341 (+) True CI01000016_00318676_00446341
CI01000016_00294886_00298452.mRNA mRNA upstream 161279 294886 ~ 299161 (+) True CI01000016_00294886_00298452
CI01000016_00229474_00234707.mRNA mRNA upstream 225525 229422 ~ 234915 (+) True CI01000016_00229474_00234707
CI01000016_00206576_00207640.mRNA mRNA upstream 252505 206576 ~ 207935 (+) True CI01000016_00206576_00207640
CI01000016_00200989_00201760.mRNA mRNA upstream 258301 200721 ~ 202139 (+) True CI01000016_00200989_00201760
CI01000016_00496095_00506965.mRNA mRNA downstream 32116 496095 ~ 507033 (+) True CI01000016_00496095_00506965
CI01000016_00540871_00541608.mRNA mRNA downstream 76653 540632 ~ 541723 (+) True CI01000016_00540871_00541608
CI01000016_00569502_00581271.mRNA mRNA downstream 105523 569502 ~ 581499 (+) True CI01000016_00569502_00581271
CI01000016_00772375_00772848.mRNA mRNA downstream 308291 772270 ~ 772889 (+) True CI01000016_00772375_00772848
CI01000016_00885996_00887374.mRNA mRNA downstream 422017 885996 ~ 887478 (+) True CI01000016_00885996_00887374
TU106281 other downstream 441421 905400 ~ 927532 (+) True G93406
TU108565 other downstream 3398196 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 3808657 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 4370579 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 4755901 5219880 ~ 5225941 (+) True G95792

Expression Profile