RNA id: TU107117


Basic Information

Item Value
RNA id TU107117
length 2986
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G94137
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 858768 ~ 862962 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGACACGTAGTATTTAAGATCTATGAAAACAAGTCTTACTATCCTTAGTCTCAGCACACGAATCGTGGGCTGAACGTCTGATGCATATGAAACACTTAACTGGAAACACTTCAGGATTTTCAAAGTTGTCATCTGGTTGGTTGAATTCTATAGGATGTCCGGGAGACGTGCGTGTTGCGTTCTTAAACAGTCCGCCTAGAAACAAATGCCGTGATGTAAAACCCCCTCATGGAAGAAGAAAGCCATCGTGTTTACAACTGTGACAACGAGTGTTTTCCATGATCAACTAAACGCTGGATTTTCAAAAGTATGTAAAGTTCACTGCTCTATTGTTGCAGTAAACTTGCACAACGTTCTTAAATTAATAATTTATTAGATACATGCCGGTCTGTTATTGTAAGAACATCGACTTTACGTTTTCACGCCCCTAAACATGACGAACAAAATGAACTGTGATTGGTTGCGTTATATGTCAGTCAAACGTCCCCTTGGGCGGTCCTTGGCCAATGAAAGCTGCGATAGAGTCCAGACCTTCTGCTGTCAGTCTGAAGGTCTGGCTACGCGAGACTATACTATCCTGTGCAGCTTTGTTTCTCAAATGAATGTATCTTGTTTATACTGTTAAATAAGAATTTATATTGTTTTAAAGATATTCTTACTGGAAAACAAGTAAAAATAAAATGCAGTTACTTATGTCGGTAACACTTTACAATAAGGTTCATTAGTTAAACATTAGTTAATGTATTAACTAAAATGAACTAACCATGAGCAATATATTTGTTACAGAATTTACTAATCTTCGTTAATGTTAGTTAATGAAAATACAGATGTTCATTGTTTGTTCATGTTAGTTCAGTGCATTAACTAATGTTAACAAGATTTTAATAATGTATTAGTAAATGCTGAAATTAACATTAACAAAGATTAATAAATGCTGTATAAGTGCAGTTCATTATTAGTTCATGTTAACTAATGTAGTTAACTAATGTTAACTAACGAACCTTATTGTTAAGTGTTACCCTATGTCTATATTCTAAGTCAGTGAGAAGTTTTTGAGGCAACAATCCACCGGAAGGGATGATAATCAATGAATAAGGACATAAATTTGACGTGAACATCAACTTGACTTGACTTGATCAATTTAAAGGATTAGTTCACATCAGAATTAAAATTTCCTGATAATTTACTCACCCCTATGTTATCCAAGATGTTTATGTCTTTCTTTCTTCAGTCGAAAAGAAATTAAGGTTTTTGAGGAAAACATTCCAGGACTTCAACAGTTACCAACAGGTTGAAGGTCCAAAATGCAGCTTCAAAAGGCTCTACACGTATATATGCTAGTGCAGAGGTAGTGCAAGACGAGCATTTGGTTTTTTTTTTAGTTTTTTTTTTTTTAGAAAATGACATTGTTTTGCTAGATAAGACGCTTTTTCCTCGGCTGCGATCATGTAGAGCCCTTTGAAGCTGCATTGAAAGTACAATTTGGACCTTCAACCCGTTGGTAACTGTTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTCTTCCTCAAAAACCTTTATTTCTTTTCGACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGAGGGTGAATAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAGTATATTCCACACATATCACTATCATATGACTTCGAATGTAGATTGCAAGTCATACGGGCTACTTTTCTGGTGTTTTTTGTTTTTGTTGTCGTCATTTTTGTCTTTTCTGTGAGACAAAACAGATGTGGTAACTATGGACTAGTCATAGCACGAGGATTCTTCAAACATTCTCCATTTAATGACAACAGCATACAGGTTTGGAACAACATGAGGTGGGTGAGTTTTCATTTTTAGATGATCTTTTCCTTTGAGACTGGAACATTTTATGGGATAATTATTCTCATTAAAATTTTGACTGTTACAAAAAGCTGCAGTCCCACAAAATCTGAAATCTGTTCTGTACAGCGTGCCGTCCGTGATCTGACCTTCTCCTCATATTGGATTAATTCCTAAGTCAATGTTCTACACAAACCAGTTTCACAATGGAAACAGAGAGGCATTTACAACAGACACCCGCCGTATATTCAAAAAGAAACACTCTCTTGACAAAGTCCAGAGCCAATTTGACCAGATAACATCTGTGGAGACCAGAGGAAGCTTTTCCTTTTGTGCAAAAACCAGAGCTGCTGCCTGTGAGAACTCTCGGCTTTGAAGATTCTCTGTCCTATTACGCTAAAACCTGCTCTGGATACTAGATATGCCTCAGGTAACACAGGTTCTTTCCTATAATCAACAGCAGCACCACATCTTCCATTAGGACCTTTAATAAAATTCTCTGGGAAAAAAAAAAAAAAAAAAATAGCGCAACGATCCTTTGGCAAAGCTGAGATAAAATTGAATTGCTTGAAAAGCTAAAAGGCAGCGGAAAAAAGGATTTTCAGCGTGTGCCACGAGATGACAGAATATCAAGTCGGTATGACAGAGAGTCAAGTCAAATAGTGCGTCTGTGCGGTTTGAAAAGTTTGAAAGCTGTATGAAATCTGAAGTGTGGCTCAGTACAGGCCTAATTGCTGTAATTTGTGTGCACGGTGTGTGAACAGCGCTTTTGGTGGCTATAAAGGACGAAATCAATATAGAAGATACCGACATGGCAATACTGTGTGTTTGTATGTCTGTGCGTGCTTATCTTTTCATCTCTACTCTAGCTCTCGTGTGCCTTTGTGCTGTTAACCATGATAATCTGTAAATCTGGATTTGCCCACCCTGCTGAATTATGCAAACCCAGCTCAGCTCAGGCGTGAGGAGTTTAACTGGGCTGGCAGTGGGAGACAGCTTGTAGCCTTTCTTTTAGGAAAGAATCTATCTGTCTGTCTGTCACTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107053 lncRNA downstream 12433 844085 ~ 846335 (-) True CI01000016_00843272_00857193
TU107086 lncRNA downstream 61049 797484 ~ 797719 (-) True G94106
TU107039 lncRNA downstream 112793 745672 ~ 745975 (-) True G94073
TU106969 lncRNA downstream 135469 708967 ~ 723299 (-) True G94004
TU106968 lncRNA downstream 135530 708050 ~ 723238 (-) False G94004
TU107194 lncRNA upstream 113918 976880 ~ 978159 (-) True G94213
TU107076 lncRNA upstream 120605 983567 ~ 984870 (-) True G94098
TU107060 lncRNA upstream 137462 1000424 ~ 1005716 (-) False G94084
TU107059 lncRNA upstream 138198 1001160 ~ 1005716 (-) False G94084
TU107061 lncRNA upstream 138198 1001160 ~ 1005716 (-) False G94084
CI01000016_00843272_00857193.mRNA mRNA downstream 1472 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 80671 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 88412 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 128802 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 251513 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_01088942_01089316.mRNA mRNA upstream 225590 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 270852 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 332755 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 336583 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 338296 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
TU107853 other upstream 1407874 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2122298 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2772645 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3002799 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4049746 4912708 ~ 4923404 (-) True G97040

Expression Profile