RNA id: TU107194


Basic Information

Item Value
RNA id TU107194
length 1009
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G94213
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 976880 ~ 978159 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAAAGTGAGCACAAACTTCTTGGATGATGGGATCTGGCAGAGAGCGATGATAGATGCAGGAGGAGGAGTTTCTGCTTTGTGGAGTCCAGACAACTATTCTGAGTAATCCTGCCCTCCGGCGATATGACTCTACAGTCACCTCTGAAAAATGAAACATCAAACAAGGGATCAAGTCTTCAAAACAGAGATGTCTCAATGAAATAGCCATTCCGTGATTGAGTAAAACTCTAATTGGAAATGATGCCAGAGAGAAAAGATGAGATGAGAGAAAAGGGCAGAAGAAACAATAAAATGAGAGAAGAGATAAGAAAATAAATAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAATGAGAGTTGAGAGGAATTCAGATCAGAATGGAAGAAACAAAAGGAAGAGAGAAAAAGATATCAGAAAATATCAGAGGAGACAAGCATGGCCGCAATAAGGGTTTGAAAATTAGCGAAGTCTGGGGTGTGATGTTAAGAATTGTGCTATAATAACACCTACAAATGCACTAATGTATTTCTTCAGAACCTTTTTTGCCATTCTACACTGGGTACACTCTCTCTGTTCTGTCTGTTTTGGGGGGATGGACATTCTTAAATTAGACCTATTGCCTTATTGCCTATTATCTTAGACCTATTGAGTTTGTTAACACGTTTTACTATAGACTAGGTAATTTTATTGTTTATTATTCATGTAACAATACTTTATCAGTGTAAAAGTTTTTATTTATAAGCATTGATGTATGGATGATAAGTAATAAGAACTTTGTCTTAGCATGACTTTGTGAAAGGTTAACTACTAAAATGAATGGAAAACGCAGCGCTCATCACGGTCACTTTGTACCCAGCTGTCCAATCACAGTGGAGTAGGGGCAGGACAAATACCACACCAACCAACCGCCACATTCTGCTTGTACAACATCCACAGATGACAACAACAAGCATAATAATGGAACAAAATCATTTAAAGACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107117 lncRNA downstream 113918 858768 ~ 862962 (-) True G94137
TU107053 lncRNA downstream 130545 844085 ~ 846335 (-) True CI01000016_00843272_00857193
TU107086 lncRNA downstream 179161 797484 ~ 797719 (-) True G94106
TU107039 lncRNA downstream 230905 745672 ~ 745975 (-) True G94073
TU106969 lncRNA downstream 253581 708967 ~ 723299 (-) True G94004
TU107076 lncRNA upstream 5408 983567 ~ 984870 (-) True G94098
TU107060 lncRNA upstream 22265 1000424 ~ 1005716 (-) False G94084
TU107059 lncRNA upstream 23001 1001160 ~ 1005716 (-) False G94084
TU107061 lncRNA upstream 23001 1001160 ~ 1005716 (-) False G94084
TU107055 lncRNA upstream 23385 1001544 ~ 1009153 (-) False G94084
CI01000016_00843272_00857193.mRNA mRNA downstream 119584 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 198783 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 206524 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 246914 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 369625 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_01088942_01089316.mRNA mRNA upstream 110393 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 155655 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 217558 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 221386 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 223099 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
TU107853 other upstream 1292677 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2007101 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2657448 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2887602 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3934549 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU170018 True 1871 TUCP 0.48 2 NC_056714.1 21801475 ~ 21803804 (-)