RNA id: TU107059



Basic Information


Item Value
RNA id TU107059
length 1443
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G94084
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1000424 ~ 1009153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGATTTTGTAGATTTTTTTTATTGAAAGCTTCATCAAAAGAAAACAAAATAAACAGAAGTTTAAACCTAACATCCACTGGTCTACAGACACTCTCAGGATCACAGCTCGAGCACATGGGAGGCAAGAAAGTGAAGCAACTCAAAAAATCATCATAGCATCGTAAAACTGTTCCGCTTTCATATTTCAACACCTGTACAAAAAAAAAAAAAAAAAAAACATTTCCATAAATATTTCTCTATTTCATCTGCCAGTACATTAGTGTCTAATTGAGGTTTTGCCGTTTGTGTTGAATTTGGTTGAATGTAGTACGCTGTTTCGTGACAGTCCAACGAACGAACGAACGAACATTTGTCATTCAATGACCTCAACCGTGACAGCCAATCAGATGTACAGATAAAAAAAATGCATGGCTTGGACCTCACATCCAATGAATAGGAGCCAGCGAAAACCTTCGAGTGGATAGAAGGTGTTTAGCTTACTAAATTACAGTTGGGATGAGAACCCCATCCTACAGTTAGCAAAACCTTCAGCTTAACCCGACACATTTATTCACTCTTTAATGAAAAGCATGAAGGCTGCAGAGTGTATAACGCATTCAACGACATCACACACCTCTCATATGAGACACCAGCCCGAGTTTTCTCTCCGTCCCCAAGGCCCGGACCCCTTAAATACTGAATGCTTGATAGCAGCGAGCACATGATATAAAGAACTCTCCAAGAAGACAGTGGATGACAGACACAAAACACAGTGACTTTTTTTTCCTTTTTTCTTTTTTTTTGATTAAACAGGTGAAATATGAAAAGCTAGCTTGTTGAAGCAGTGCTGACTTGGTCATTGTGAACTTGGCATCGATTTAATCCACAGTGTGAACTTGTCTCATAGCTCACTGCAATGGTCATCACAGAGGATAAAGTACACCAACTTTGTTTAATACTGTCCCCTAGTGGCTAATTGAGATTATTATGTAGCTGTATAGAGGTCATATTATAGGAATAAAAGACCAGAGTTCATGATGACGTTCAAAAGAACACATGAAGAAATCAAAATGATCTTGATGACTCTCGTTGGCCCTTTAATGACAGGTGAATTTATTCCCAGAGCACCTCGACAACTCTAATTACCCGACCGTAAAACTAGGAGGTGTATTTATGAAGCGTACGACCATGAAGGCAGCAAAGACAGTCCATAATTCACCATGTGTATTGAAACTCTTTGCTGATGTGTTAATAGTGCTGCAGGGATGACGTATTTTTGTAGGCCAAAAACCCGGAAACGAGTTCTAGCACTTCCCGTTCCATCATCCCAAAGTCAGTGGGATTTATGAATGGGTCAAGCTCAATATATTTTCACATTTTATTCTACAACTTAAAATTTATCACTAATATTTATCTTTATTTTTTTTTTTTTTTTTATATGTCTACAAATGTTGCAATGTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107076 lncRNA downstream 16290 983567 ~ 984870 (-) True G94098
TU107194 lncRNA downstream 23001 976880 ~ 978159 (-) True G94213
TU107117 lncRNA downstream 138198 858768 ~ 862962 (-) True G94137
TU107053 lncRNA downstream 154825 844085 ~ 846335 (-) True CI01000016_00843272_00857193
TU107086 lncRNA downstream 203441 797484 ~ 797719 (-) True G94106
TU107229 lncRNA upstream 37862 1043578 ~ 1043797 (-) True G94247
TU107220 lncRNA upstream 50639 1056355 ~ 1057041 (-) True G94238
TU107235 lncRNA upstream 53572 1059288 ~ 1060054 (-) True G94253
TU107240 lncRNA upstream 119326 1125042 ~ 1125924 (-) False G94256
TU107242 lncRNA upstream 119326 1125042 ~ 1131942 (-) False G94256
CI01000016_00843272_00857193.mRNA mRNA downstream 143864 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 223063 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 230804 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 271194 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 393905 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_01088942_01089316.mRNA mRNA upstream 82836 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 128098 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 190001 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 193829 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 195542 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
TU107853 other upstream 1265120 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1979544 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2629891 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2860045 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3906992 4912708 ~ 4923404 (-) True G97040

Expression Profile