RNA id: TU107055


Basic Information

Item Value
RNA id TU107055
length 2835
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G94084
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1000424 ~ 1009153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGGATCCTGGACTTTTTAACCAGTAGACCTCAGACAGCCCGTGTTGGCTGCAAAACCTCCAGCATTACCACACTGAGCACTGGCAAAGTCCTTTTCAAAGAAAGTCTGTTCACTTGGCGGCCATATTTGCAATGCCTCCAGGCAGCTATTTCGGGCATCCCAGACCAAATCCTATCTACTTGAATGGGGGAATCCTGAAATCTCAAAAGCTGCTTGCAGAACTCAANNNNNNNNNNATTGCGCTCTTGCAAACTTAAACTTTAAGGGAAAATATTTAAAAAAAAGTAAAGACTGAAATGGGTGTCAGAAGTGTAATGGTGGTGATGTTTAAGTTAAGTGACTGGTGTAGTTTGTTTATAGCCTACAGTACGAGTAGCTTTTTACTTGTGGCGATTGTATTTACGCTTCGGAATTCATAAAAGTTGTGTTCATTTGTGAAGATTATCATGATGAACAAAATGTGTGAGACTTTTGTTGGTCACAGAGCTTATTTTCTGCAATAATCCAAAAGCCAATGGAAAAATACTAGTATTTTTGTCAAAGGAACACGGGTAATGCTAACTTCCGGGTTGGCCTACAAAAACACCTCATCACTGTAGTGCTCTATAGAGTTCTATACTATCAGACCGCATCAAAAAAACATCTACTTCATGGTAAATAAAGGACAGCAGCCTTGTTTTTATATTAATATATGAGACGTTACCCCTTTCTACTCTTCTGTTAGCTAGTTTCCCCCCTCTGGAATGGGTAGCCTGATAAAATGAAAGCAGATTTCAGATATGGAAAGTCGAGATGTCTAATTCCGAGCTGTCAAGGCACCTGAGCAACCGCCGAATCCCATGATGATGGGCACCTTAGGCCCTGTCCCAAATAACAAACTGGATGTGCATTCGCTGTCTTGCGATTTGACATTTAAGGGTTACTACTACGGATTTCTAACTGCATTACGTCACCAAAATATGGACTTTAAAGCAACCGCAAGGGTTTTGGGACAGAGCCTTCGTTTTTCAAGTAAAGAGTGTTATTTTCACGAGAGATTTCCTATGGCATCTGGTTGATTAAAGAAACTTTGCATATAATATGAGGCGTTTGGATCGCAAATACATCTACAGAGAAAGACGGAGGTGCTCAGAACAACGTGTCATGCTAATGCTGCTAATTGCAAATGTTTCTCAGTGCCCCTGAAGCAAAGCTTGTGTTTTATGACCTGCAACACATTCTCCTGTGTTTCCTCATGGTAAAATTGCTTTCAATGAGGTAGTGATCTGTACACAGAGTTTAAATATACACTAGTGAGTGCTTTGATACCTTCCTGTTAAGTTGAAATGATGAAAACTGCCTTCTTTGTGAGAAAGCTCGAACTGAACGGACGTGCGACATGTTAAATGGCGACCAACCCATCGGTCGGTGACTGGGAGGTGCAGCGATAGAGGTATAGTTCATTCAGCCGGGCAGACGCGAGATGATTGATGGTTCAGCCACTCTCTGACGCCCTCTGGTGGGGAGATCACACTCGTGTGAATCAGTGATGGTGGTTTTCTGCCTCTCAACTGAACGATTGACATAGATTCTGCAACAGTGGAAGGAAGTTTAAACCCTAAAGTACCAATTTGGCCGTCAAGGTCAAACGGATACTTCTGAAACAAAATTAATATGCCAAAACATCTCAAATAGAAAAAAAGAAACTAAAAAATTGATCCACTCCACTGTCTTGAGGGGGGGTTTCTTCATCTTTGGTATAAAATATGCCATCCATGGGCTGCATTTGATCCACAGCTAAGAAAGACTAAAGAAATTGTCAACAATTTCCTATTACTATTGCTTTTTGCACACATTTGCTTTTTTTCGTTTTGATTTAATCCGTAAGCTTTTATCTATGTAGATTTGCGCTGCCATTTTTTTTTTTGACTGTTTTCGTTTTCTTTTTTCCGCAATGAAACAAGCAAAGCAGGCTAAAAACACCTTAAAGCTCATAAAAAATATTGCAGATAAAAACAATAATGCCATTAAAAATGATCTGCACTACACAATAAACTGCATTTCCCATGATGCAGTGGATTAACATTTTTTTCCTCTGTTTCTAAAAAAATGCAACTCTGTTTAATCATCATCATCATCATGACCACAATATTTTTTTGTCTGTCCTCTCTTTTAAACACATAGTCACCACTGATAATTTAAAACGTCTCAAGGAGACCTCTCTCTCTTTCTTTCTATGCTTTATACAGGTAATTTTCCTTTCTTTGTCAGGTCATTTTCACTGCATTTATCAGTCTGTTCAGTTCAAACAGGAAAAAGTCTTAGATGTTTCTCGAAATTAAGGCAACAAAGATGAAAAAACATTAATCTTCTCTAGAAAACTAAAATCTAACTCATAAAAAAAGAAAAGTAATAGTAGCTTAGAATCCGAGGAAGACTTCTTTTGCTCCTTCTCTCATTGTTTTACAAGAACGTGCTTCCTCGTCTAATAGAAAAACCCACTGTTTCTGAAAACCTACCTGCACATTCAAAAAAAGAATAGGAAAACTTGTACTTGTTTGAATTCGTTCACTTCATGAAGGTACAGTTTTTCGGGTAGCCGATTAACAGTAGGCTCGATCTCCCAGACTGCATTTGTCTCGTTTCCTGTCTGGTTGTGAGTTCTCCAAAGGTCCTCCGGTGTGGGCCAGGTGTTAAATAAATTGTTTTTTGTTGTTGTTTTTTTTTAAGATGCTTGTGCAAAAGTAGACACAAACGTGTTTTCCTATCTCTTGCGCTCTGTCTTCAATGTTCCCTCGTTGCAGTCCCCCAGTCTCAAGGCAACGCAGTCACCTCAACGCCCCACTTCTCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107076 lncRNA downstream 16674 983567 ~ 984870 (-) True G94098
TU107194 lncRNA downstream 23385 976880 ~ 978159 (-) True G94213
TU107117 lncRNA downstream 138582 858768 ~ 862962 (-) True G94137
TU107053 lncRNA downstream 155209 844085 ~ 846335 (-) True CI01000016_00843272_00857193
TU107086 lncRNA downstream 203825 797484 ~ 797719 (-) True G94106
TU107229 lncRNA upstream 34425 1043578 ~ 1043797 (-) True G94247
TU107220 lncRNA upstream 47202 1056355 ~ 1057041 (-) True G94238
TU107235 lncRNA upstream 50135 1059288 ~ 1060054 (-) True G94253
TU107240 lncRNA upstream 115889 1125042 ~ 1125924 (-) False G94256
TU107242 lncRNA upstream 115889 1125042 ~ 1131942 (-) False G94256
CI01000016_00843272_00857193.mRNA mRNA downstream 144248 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 223447 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 231188 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 271578 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 394289 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_01088942_01089316.mRNA mRNA upstream 79399 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_01134396_01182271.mRNA mRNA upstream 124661 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 186564 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 190392 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 192105 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
TU107853 other upstream 1261683 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1976107 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2626454 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2856608 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3903555 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU123648 True 252 lncRNA 0.46 1 NC_048566.1 5895808 ~ 5896059 (+)
eurasian perch (Perca fluviatilis) TU123648 False 211 lncRNA 0.35 2 NC_053120.1 409683 ~ 410825 (+)
eurasian perch (Perca fluviatilis) TU182511 True 7252 lncRNA 0.41 2 NC_053124.1 22653775 ~ 22661054 (-)
bowfin (Amia calva) TU123648 True 218 lncRNA 0.41 2 CM030132.1 14034258 ~ 14038303 (-)
mexican tetra (Astyanax mexicanus) TU123648 True 4162 lncRNA 0.39 4 NC_035906.1 19144086 ~ 19148318 (-)