RNA id: TU107242


Basic Information

Item Value
RNA id TU107242
length 2738
lncRNA type antisense_over
GC content 0.43
exon number 7
gene id G94256
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1125042 ~ 1131942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTTTCATCGAGTCTTTTAATCACAAATGGCATCAACTCATTCTCACAAACAGCATCTTTGCCTTTCTCTCACTCTTTTTAATTTTTTTTTTTATTTTACAATTTATGGAATAAATTTTCACTTGAAAAAAAAAAATAATAATAATACAGTTTTTGCATTTCAGGATGAAAAGCGTCCTCTTCTCAACTTCAAATTCATTCTTATTAATAAATACCTTCTAAGATTCAGAGCCCTCTGAGAAGAATTATATGGATATGTTGCGGAGAAGAGGGGAAAAAACGATCAATTTTTCCTTCTAATTATCTTACAAAAAAACAGATGTAGCAAAAGCAAAGTAAGGTTGAAAACCAGTAAGGTTGAAAACCAGAAAGGCAGAAAACAAAGGGGAAAATGTTTAAATGGCAGCCCAGAAGAACTGAGAAAAGGAAAACCCATCGGATGTTGCAGGAAGCGCCCTTTTCAACGTAAAAAAATGGAATATTCACACTAAAAATACGCACTCTCCACCTGCATGCTACTCAGTAGTGGATCCACATTAAGGTGAACTAAGACAAAGTGCATTCAGGCTAGTAATGCAGCATTTTAATAAACCTACAACTAATTAAATTCACTCTTTGTCCTGGCAGACAGTCGTTTAGGAAGAGGGGGGAAAATTTTTGATTTCTAATTGGCCCAAGAAAAACATCTGTTTTTCGCAAACGTGTGCGCAGGTGATGCCAAGCCACAGCACCCCCTCTGGACAAAACACATGAGCAATAAAGGAAATAAAAGCGGATTCTTCATTTCTATTTAGAATTATTGCATAAAATCTTACAACCAATAGAAAAACGAAACAAAAACATTCAAAATGATGTAACAAACAAAATTATTTATATTCAAAAATCACCACAACAGTTAAACATTATTAATAATCTAGTCTTTTGCCATGTCTGCCATAGGGAAAGAAAAACCCCTCACAAATTCAGAGCCACAAAGACCCCACTGCATTCTGTCACATAGAAACCGGGTTTGTCGGATAACAGTTAAAACCAAGAGAGCATTTTAGGGGCCGTCACACTGTAGACGGCTCCATATTCCTCAGATTTTCCCACATCTTTTATTTTTAAATGGTTTTATAATCAAAAGGTAACAATTTATCACAGGCTCTGACAAAACAAAAAAATCTCTTTGGTGCTCCAAGGTTCACTGAGCTTAATGAATTCATATTTGTTGGTTGTTTTAGCATTCGGTTGTATTATATTAAACTGTACCACAAAAAAAGTGCCTGCTGTTTGAGACACGGCAGCGCTCTCGCTTCACCAGCACATTCAAGTACAAAAGAAAAAACAATGAAACAAAAAAAGAACACATGAACAAATTAAGTCCAGAGTTGTCAGAATAAAACTGCGGTGCAGATCCCCATCCTCCAACCGGTCATGGAACCTCCAGGAACCTCGTGGCAATCGCCGGACCAAAAGCCTCCAATCAAACGTTCTCAGGTGGGCGGCGCCAGACAACATGTTTGTTCTTTTTGATTGGTGGATTACTTACTAGTTGCATTTGTCCTTGTCTTTTGTTTTCCTCTTTTTCCATTCTCAACGTTATCATTCAATAGCTAAACAGACTTCTTGTTCAGTTTCTTGCCTTTTTTCAGAGCCAGCTTGTTTTTGATGTATCCCCTCTTCCTTTTGGCTGTCTTTTTGAGGTGTACTTCTGCTTGGCTGCGATGTTGCGGAGCTTGTGGTCCAGGGCCTGTCGGTTCTCTTGCTTCTTCACCCTGTAGATGCGCACGAGCCAGTGCTCAGAGGTAAACGCCTCCTCCAAATGTTTCAGACGGATGTCCTTATTGCCGATCTCTGCGTTCCGTGTCCGGTCAAATCCAGGGGGTGTGCGGAAGTCCAGTTGCATTTCCCCAAAGCGGTAGTAAGACATCTTGTACATCAGGCAGTTGAGCAGGGTGGGAGAGCCTGCCTTATCCACTCTAAACTCCCCCTGTGGAGTGAAGTAATCACTTTCCCGGATATCTTTAGGGTGCTCCCCCTCAGCGATGCGCACCATCCACAGGAACTTGTTAATGTCGTCGCCTGAGTATCCAATCACTCCCCCAAAGATGATCAGAACGTAATCCACATCCAAGGACTTCATAATCTCATAGGCTGCACTCTCATTGGAGGACATGGCTTTACCGACCAGTGCTATGTGGCTGTTATTCCACGTGTTGTTGTCCACCAGCGTGGTGCGGTTGGCCATGCCGGCGATCTGATATCCATAGTCCCACCAGGACATGACTCGAGCGTGTTCATCTGTATTCTGCCTGAGCCAGTAATACGCTTCACGGAAATCATCCAGAATGTTGCGTGATCCATCATGGTTGTATGATGCCAGCACTACGCTGGGACTGGAGTAGGCGTTGCTGGTGACCCACGTGCAGTGCACCGCAAACATCATCAAGAGCATCAGCATTAACATGGTAACGATGCTTTTGATGTTGGGGCCCAAACCCTCTTCTGGCCGGTCCTGCTCTGACACGTGCTTTCGGACTTTGCCGGCCTTATCATAGAGGTTCCCCTGATTCCTCTTGTCATCCTCATCACTGCTGTCCTCGGCCGGAGGGTTCTCACGCTTCATGTCATCACCCAGGTAGTGCTCGAACACACTGGAGAAGGCGATGGCTGACAGCATGCACACCACTGGGGTGAGTGTCAGCATCAGACGCACCATCACACCAGCAAAGTACACCGCGCTGATGGCGTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107235 lncRNA downstream 64988 1059288 ~ 1060054 (-) True G94253
TU107220 lncRNA downstream 68001 1056355 ~ 1057041 (-) True G94238
TU107229 lncRNA downstream 81245 1043578 ~ 1043797 (-) True G94247
TU107057 lncRNA downstream 117383 1001544 ~ 1007659 (-) True G94084
TU107056 lncRNA downstream 119326 1001544 ~ 1005716 (-) False G94084
TU107299 lncRNA upstream 113404 1245346 ~ 1245597 (-) True G94310
TU107305 lncRNA upstream 131565 1263507 ~ 1263749 (-) True G94316
TU107340 lncRNA upstream 203140 1335082 ~ 1335664 (-) True G94351
TU107394 lncRNA upstream 320233 1452175 ~ 1452402 (-) True G94394
TU107354 lncRNA upstream 431147 1563089 ~ 1563911 (-) True G94364
CI01000016_01088942_01089316.mRNA mRNA downstream 35703 1088552 ~ 1089339 (-) True CI01000016_01088942_01089316
CI01000016_00843272_00857193.mRNA mRNA downstream 267746 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 346945 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 354686 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 395076 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_01134396_01182271.mRNA mRNA upstream 1872 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 63775 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 67603 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 69316 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
CI01000016_01224759_01234682.mRNA mRNA upstream 92194 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
TU107853 other upstream 1138894 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1853318 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2503665 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2733819 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3780766 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021353 False 4224 mRNA 0.47 16 NC_007127.7 39385483 ~ 39477746 (-)