RNA id: TU106360


Basic Information

Item Value
RNA id TU106360
length 258
lncRNA type intronic
GC content 0.34
exon number 2
gene id G93476
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1212344 ~ 1212621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGAATTCAAATGAATGTCTATTTTATATCTAGGCTTGTTCTGTTGGTTAAATGGCCCCTATTATGCTCATTTACAGGGTCTACGTTAAAAAAAAAAACAAAAAAAACAAAAAAAAACAAACAAACAGTATTTTTCTTGTAATTTACATTGTTGCAGCACCTGTTTTCACCCTCTGTCTGAATGCTCAGTTTTAGTTTCAGTTTCTTTAAAACCCGCTTTGAAAAGCGTAAAATGCTGTGATTGGTCAGCCGTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106322 lncRNA upstream 13971 1195710 ~ 1198373 (+) True G93442
TU106312 lncRNA upstream 127577 1084467 ~ 1084767 (+) True G93434
TU106288 lncRNA upstream 132409 1078828 ~ 1079935 (+) True G93413
TU106289 lncRNA upstream 171919 962579 ~ 1040425 (+) True G93414
TU106284 lncRNA upstream 279543 927840 ~ 932801 (+) True G93409
TU106332 lncRNA downstream 15577 1228198 ~ 1235846 (+) True G93449
TU106382 lncRNA downstream 49299 1261920 ~ 1262207 (+) True G93497
TU106367 lncRNA downstream 127831 1340452 ~ 1342798 (+) False G93483
TU106368 lncRNA downstream 127831 1340452 ~ 1341657 (+) True G93483
TU106433 lncRNA downstream 182077 1394698 ~ 1449594 (+) True G93547
CI01000016_01183747_01191853.mRNA mRNA upstream 19486 1183747 ~ 1192858 (+) True CI01000016_01183747_01191853
CI01000016_01122656_01129008.mRNA mRNA upstream 83336 1122656 ~ 1129008 (+) True CI01000016_01122656_01129008
CI01000016_01052539_01073915.mRNA mRNA upstream 136811 1052539 ~ 1075533 (+) True CI01000016_01052539_01073915
CI01000016_01033465_01037665.mRNA mRNA upstream 173898 1033465 ~ 1038446 (+) True CI01000016_01033465_01037665
CI01000016_00972599_01002933.mRNA mRNA upstream 209172 972112 ~ 1003172 (+) True CI01000016_00972599_01002933
CI01000016_01217119_01220858.mRNA mRNA downstream 4498 1217119 ~ 1221937 (+) True CI01000016_01217119_01220858
CI01000016_01238151_01242924.mRNA mRNA downstream 25370 1237991 ~ 1242960 (+) True CI01000016_01238151_01242924
CI01000016_01253760_01273553.mRNA mRNA downstream 40785 1253406 ~ 1273953 (+) True CI01000016_01253760_01273553
CI01000016_01277792_01304615.mRNA mRNA downstream 64307 1276928 ~ 1304762 (+) True CI01000016_01277792_01304615
CI01000016_01408124_01408966.mRNA mRNA downstream 194015 1406636 ~ 1409165 (+) True CI01000016_01408124_01408966
TU106281 other upstream 284812 905400 ~ 927532 (+) True G93406
TU108565 other downstream 2649554 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 3060015 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 3621937 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 4007259 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 4193248 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile