RNA id: TU107340


Basic Information

Item Value
RNA id TU107340
length 583
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G94351
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1335082 ~ 1335664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCAATTTCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGATATACACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGACTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAAAGATACCCGGAATTTATACTGTAGGGATGGTCATTTAATGAAACTCAAATGTAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATGAGCTGTACGCTCTAATCAACAAATTAAAAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTTTTAAATAATTTACAATAAAAAAATGAACTTTTTCACGATATTCTAATTATATGACCAGCACCTGTATATATATATCCTGAAATGATGTTGGTGTGAATGGTGTATCCTCTAAAACTGCAGTGAAACACAGGATGCAAGAGATGTCTCAATTAGGTTGACTATAAACAAGATATGACACAAATTGCACTCAACCAAATGACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107305 lncRNA downstream 71333 1263507 ~ 1263749 (-) True G94316
TU107299 lncRNA downstream 89485 1245346 ~ 1245597 (-) True G94310
TU107242 lncRNA downstream 203140 1125042 ~ 1131942 (-) False G94256
TU107239 lncRNA downstream 203140 1128797 ~ 1131942 (-) False G94256
TU107241 lncRNA downstream 203140 1128797 ~ 1131942 (-) True G94256
TU107394 lncRNA upstream 116511 1452175 ~ 1452402 (-) True G94394
TU107354 lncRNA upstream 227425 1563089 ~ 1563911 (-) True G94364
TU107434 lncRNA upstream 229656 1565320 ~ 1565651 (-) True G94433
TU107435 lncRNA upstream 232391 1568055 ~ 1568282 (-) True G94434
TU107450 lncRNA upstream 287368 1623032 ~ 1624002 (-) True G94449
CI01000016_01224759_01234682.mRNA mRNA downstream 100400 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
CI01000016_01202843_01213613.mRNA mRNA downstream 121469 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
CI01000016_01199558_01199730.mRNA mRNA downstream 135352 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01195747_01197970.mRNA mRNA downstream 136020 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01134396_01182271.mRNA mRNA downstream 152811 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01341525_01342959.mRNA mRNA upstream 5683 1341347 ~ 1343558 (-) True CI01000016_01341525_01342959
CI01000016_01396291_01399075.mRNA mRNA upstream 59051 1394715 ~ 1400954 (-) True CI01000016_01396291_01399075
CI01000016_01476991_01494147.mRNA mRNA upstream 141173 1476837 ~ 1494994 (-) True CI01000016_01476991_01494147
CI01000016_01577710_01581289.mRNA mRNA upstream 240742 1576406 ~ 1581679 (-) True CI01000016_01577710_01581289
CI01000016_01653014_01654553.mRNA mRNA upstream 316723 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
TU107853 other upstream 935172 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1649596 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2299943 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2530097 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3577044 4912708 ~ 4923404 (-) True G97040

Expression Profile