Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU106433 |
| length | 691 |
| lncRNA type | read_through |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G93547 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 1394698 ~ 1449594 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU106367 | lncRNA | upstream | 51900 | 1340452 ~ 1342798 (+) | False | G93483 |
| TU106368 | lncRNA | upstream | 53041 | 1340452 ~ 1341657 (+) | True | G93483 |
| TU106382 | lncRNA | upstream | 132491 | 1261920 ~ 1262207 (+) | True | G93497 |
| TU106332 | lncRNA | upstream | 158852 | 1228198 ~ 1235846 (+) | True | G93449 |
| TU106360 | lncRNA | upstream | 182077 | 1212344 ~ 1212621 (+) | True | G93476 |
| TU106455 | lncRNA | downstream | 12006 | 1461600 ~ 1461978 (+) | True | G93567 |
| TU106453 | lncRNA | downstream | 12523 | 1462117 ~ 1469355 (+) | True | G93565 |
| TU106512 | lncRNA | downstream | 46799 | 1496393 ~ 1554026 (+) | True | G93624 |
| TU106614 | lncRNA | downstream | 464203 | 1913797 ~ 1942317 (+) | True | G93711 |
| TU106696 | lncRNA | downstream | 518944 | 1968538 ~ 1978432 (+) | True | G93780 |
| CI01000016_01277792_01304615.mRNA | mRNA | upstream | 89936 | 1276928 ~ 1304762 (+) | True | CI01000016_01277792_01304615 |
| CI01000016_01253760_01273553.mRNA | mRNA | upstream | 120745 | 1253406 ~ 1273953 (+) | True | CI01000016_01253760_01273553 |
| CI01000016_01238151_01242924.mRNA | mRNA | upstream | 151738 | 1237991 ~ 1242960 (+) | True | CI01000016_01238151_01242924 |
| CI01000016_01217119_01220858.mRNA | mRNA | upstream | 172761 | 1217119 ~ 1221937 (+) | True | CI01000016_01217119_01220858 |
| CI01000016_01183747_01191853.mRNA | mRNA | upstream | 201840 | 1183747 ~ 1192858 (+) | True | CI01000016_01183747_01191853 |
| CI01000016_01476236_01476607.mRNA | mRNA | downstream | 26642 | 1476236 ~ 1476762 (+) | True | CI01000016_01476236_01476607 |
| CI01000016_01509959_01560806.mRNA | mRNA | downstream | 60365 | 1509959 ~ 1561122 (+) | True | CI01000016_01509959_01560806 |
| CI01000016_01563821_01567070.mRNA | mRNA | downstream | 112804 | 1562398 ~ 1567529 (+) | True | CI01000016_01563821_01567070 |
| CI01000016_01588035_01601276.mRNA | mRNA | downstream | 137476 | 1587070 ~ 1601909 (+) | True | CI01000016_01588035_01601276 |
| CI01000016_01656995_01657299.mRNA | mRNA | downstream | 207401 | 1656995 ~ 1658390 (+) | True | CI01000016_01656995_01657299 |
| TU106281 | other | upstream | 467166 | 905400 ~ 927532 (+) | True | G93406 |
| TU108565 | other | downstream | 2412581 | 3862175 ~ 3862305 (+) | True | G95439 |
| TU108786 | other | downstream | 2823042 | 4272636 ~ 4273905 (+) | True | G95648 |
| TU108629 | other | downstream | 3384964 | 4834558 ~ 4836655 (+) | True | G95503 |
| TU108946 | other | downstream | 3770286 | 5219880 ~ 5225941 (+) | True | G95792 |
| TU109033 | other | downstream | 3956275 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
