RNA id: TU107354


Basic Information

Item Value
RNA id TU107354
length 823
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G94364
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1563089 ~ 1563911 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTCCAGCGGTGAGACTGCTGCGTCTGACAGTGGCTGTAGTCCACACAGTTCAACACGATCAGCGCAAATGAGAACAGGCGAAACTGCATCTGGGCGGCTGTATGATTGTCCCGACTCACGGTAGAAAGCGTCAAAGGTACTCGCCGCGAGCCTTCAAGGTCCGTATAAGAGGTTTCAATATGTATATTTTTCCACAGAGGAGCAGGGAGTTGAGGAGTCCGGACTCGGTTGTGTCACACATTAGATGGGTAGAGAAAACACCATTTCTCACCACCGGTTAATGTCATTTTAAAGAGCGAAACGTGCTTTTTTTTAACAATAAAAAGTGTCTCGTTAATGTCTGTGGAGAAAGAAAAGCTTTTAACTTGAGCTTCTTTGAGTAACAATTACACCTTGATGGATCAATGTGTTTGCGAGTGAACTATTTCATTCAAAAGAACTTAAGGAATTAGCGAATCTCCAAAAGCGCACGAGACGCGGGATGCCTTCAAAAGTAGATGCACAGAGCGAAAGAAATATACCTGCGCGAGTCCAGTCCAAAAAAAAAGAAGAGAAACTTAGCCTATACATCAAGTTCCTTCCGACTGCCAAAGTGGACTTGGAACATCCAGCATCCCTCTCGCAGGAAAAGTTTAGTCCTTTCGTCCCCTAGACAGAGTGAGAAAACACATGGATGCAATAGTCTGCAAAAGCTCTAGAATAAACCCTTGAGGTGCATGAGGATGTGTGTGTAACTGTGGCATATGCTGCAGTGCTCGGCTGGTGATGGAGTATCACTCTACTGGTGCTGATGCTATATAGGCGCTGCTGTCACGTGGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107394 lncRNA downstream 110687 1452175 ~ 1452402 (-) True G94394
TU107340 lncRNA downstream 227425 1335082 ~ 1335664 (-) True G94351
TU107305 lncRNA downstream 299340 1263507 ~ 1263749 (-) True G94316
TU107299 lncRNA downstream 317492 1245346 ~ 1245597 (-) True G94310
TU107239 lncRNA downstream 431147 1128797 ~ 1131942 (-) False G94256
TU107434 lncRNA upstream 1409 1565320 ~ 1565651 (-) True G94433
TU107435 lncRNA upstream 4144 1568055 ~ 1568282 (-) True G94434
TU107450 lncRNA upstream 59121 1623032 ~ 1624002 (-) True G94449
TU107517 lncRNA upstream 169168 1733079 ~ 1737573 (-) True G94510
TU107462 lncRNA upstream 233718 1797629 ~ 1826281 (-) True G94460
CI01000016_01476991_01494147.mRNA mRNA downstream 68095 1476837 ~ 1494994 (-) True CI01000016_01476991_01494147
CI01000016_01396291_01399075.mRNA mRNA downstream 162135 1394715 ~ 1400954 (-) True CI01000016_01396291_01399075
CI01000016_01341525_01342959.mRNA mRNA downstream 219531 1341347 ~ 1343558 (-) True CI01000016_01341525_01342959
CI01000016_01224759_01234682.mRNA mRNA downstream 328407 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
CI01000016_01202843_01213613.mRNA mRNA downstream 349476 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
CI01000016_01577710_01581289.mRNA mRNA upstream 12495 1576406 ~ 1581679 (-) True CI01000016_01577710_01581289
CI01000016_01653014_01654553.mRNA mRNA upstream 88476 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
CI01000016_01659416_01671969.mRNA mRNA upstream 95063 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01689633_01693021.mRNA mRNA upstream 125584 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01835869_01947822.mRNA mRNA upstream 271834 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
TU107853 other upstream 706925 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1421349 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2071696 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2301850 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3348797 4912708 ~ 4923404 (-) True G97040

Expression Profile