RNA id: TU107450


Basic Information

Item Value
RNA id TU107450
length 831
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G94449
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1623032 ~ 1624002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATGCTATGTGGAGGCTATGTTTTTTATTTAGCTTTTTTGTTCTTTTTAAATTCATTTAACTGTAGCTGGTATTATAACCCTTTACACATTTAAAAGCTGAAGGTGTCAATACTGAAAATACAGTAAGGTTTTTTTATATTTATCATCAATGTTACCATTATTAGATAAACTCACCGACTATGTACACATGAGTTTGTGGCCATGCTAGTTGAACAACTAAGATTCTTACCCACAATATACAGTTAAAGCATAAAGCGGTCTGGACGTAAACATCTTGTGCTGAGAATAATAATTTCGCAACTATGCATGGTTTGCAACATTGCTATGAAAAACAAAGTACCTATTTGACAAGAAAGGCCATACATGATGCACTCTGCCTTGATTTTTAAGGAAGGGGAATGGTGTAAATTGTACATAAATACAGATAAGTCTCTCTCTTGTTTTTCAGGGCATCATAATCAGTCAATCATCACGTAACCTTTCCGATCTCTTCTGCTCCTTTCGCCACTCTGTGCTCGTTCAACTCCTCCAGGTCTCCATGCCCAAGCTTTCTGTGCTTCCAGCTCAGTCTCTCTCTTCTTCCTCCTCAAACAGGACGAGATATGAGCTATATGAACAGCTGCTGTAGTGTTCCATGATATCACAGTGGGGTCATGGGTCGGGGGGACGTGTCACCGGTGAGGGAAGCAGCAGGAGGCACAGAGACACAGTGTGACCACATGACCCGAACAGAGGCGAGGTGGTCGCTGTGTTGGTTCTGGGCCCGGAACCGCAGCCTCTGCTTGTTGGACTTCTTCTTTTGGTCTTTGGTCCGGGGGCCCTTCCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107435 lncRNA downstream 54750 1568055 ~ 1568282 (-) True G94434
TU107434 lncRNA downstream 57381 1565320 ~ 1565651 (-) True G94433
TU107354 lncRNA downstream 59121 1563089 ~ 1563911 (-) True G94364
TU107394 lncRNA downstream 170630 1452175 ~ 1452402 (-) True G94394
TU107340 lncRNA downstream 287368 1335082 ~ 1335664 (-) True G94351
TU107517 lncRNA upstream 109077 1733079 ~ 1737573 (-) True G94510
TU107462 lncRNA upstream 173627 1797629 ~ 1826281 (-) True G94460
TU107657 lncRNA upstream 448462 2072464 ~ 2078409 (-) True G94634
TU107697 lncRNA upstream 526361 2150363 ~ 2150589 (-) True G94674
TU107788 lncRNA upstream 556252 2180254 ~ 2180460 (-) True G94748
CI01000016_01577710_01581289.mRNA mRNA downstream 41353 1576406 ~ 1581679 (-) True CI01000016_01577710_01581289
CI01000016_01476991_01494147.mRNA mRNA downstream 128038 1476837 ~ 1494994 (-) True CI01000016_01476991_01494147
CI01000016_01396291_01399075.mRNA mRNA downstream 222078 1394715 ~ 1400954 (-) True CI01000016_01396291_01399075
CI01000016_01341525_01342959.mRNA mRNA downstream 279474 1341347 ~ 1343558 (-) True CI01000016_01341525_01342959
CI01000016_01224759_01234682.mRNA mRNA downstream 388350 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
CI01000016_01653014_01654553.mRNA mRNA upstream 28385 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
CI01000016_01659416_01671969.mRNA mRNA upstream 34972 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01689633_01693021.mRNA mRNA upstream 65493 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01835869_01947822.mRNA mRNA upstream 211743 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_02120276_02136906.mRNA mRNA upstream 496154 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
TU107853 other upstream 646834 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1361258 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2011605 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2241759 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3288706 4912708 ~ 4923404 (-) True G97040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021334 False 2297 mRNA 0.45 5 NC_007127.7 38453876 ~ 38553721 (-)