RNA id: TU107517


Basic Information

Item Value
RNA id TU107517
length 303
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G94510
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1733079 ~ 1737573 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAAGAAGAAGTGACAACATTTTAAATAAAACAGGACGCTTCTGAACGGTGACTGGCAGACTGCGGGTGATTGGCTGACGTAGTGTTGCACCTGCACGAAATCAACACGCTTTCAAAAAGGGACTCATTCGAACTGATGGCGGGAGGAGACTTGGTGCTTGTTGGCGTTTGTCGTCTGTCATGAGGCTACGGGAGTTCTCGAGGGATATGGAGGTTGCGGGAGACCACCGCCGCACTCGAGGAGTTCTCGTTCTGATCCGCCTTCCCAAGAACAGATTTTTGGACCTTAATCTTTCGTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107450 lncRNA downstream 109077 1623032 ~ 1624002 (-) True G94449
TU107435 lncRNA downstream 164797 1568055 ~ 1568282 (-) True G94434
TU107434 lncRNA downstream 167428 1565320 ~ 1565651 (-) True G94433
TU107354 lncRNA downstream 169168 1563089 ~ 1563911 (-) True G94364
TU107394 lncRNA downstream 280677 1452175 ~ 1452402 (-) True G94394
TU107462 lncRNA upstream 60056 1797629 ~ 1826281 (-) True G94460
TU107657 lncRNA upstream 334891 2072464 ~ 2078409 (-) True G94634
TU107697 lncRNA upstream 412790 2150363 ~ 2150589 (-) True G94674
TU107788 lncRNA upstream 442681 2180254 ~ 2180460 (-) True G94748
TU107791 lncRNA upstream 459692 2197265 ~ 2197495 (-) True G94751
CI01000016_01689633_01693021.mRNA mRNA downstream 39407 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01659416_01671969.mRNA mRNA downstream 61110 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01653014_01654553.mRNA mRNA downstream 78520 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
CI01000016_01577710_01581289.mRNA mRNA downstream 151400 1576406 ~ 1581679 (-) True CI01000016_01577710_01581289
CI01000016_01476991_01494147.mRNA mRNA downstream 238085 1476837 ~ 1494994 (-) True CI01000016_01476991_01494147
CI01000016_01835869_01947822.mRNA mRNA upstream 98172 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_02120276_02136906.mRNA mRNA upstream 382583 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
CI01000016_02263634_02265929.mRNA mRNA upstream 525672 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
CI01000016_02288848_02311105.mRNA mRNA upstream 549724 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02328065_02334778.mRNA mRNA upstream 590239 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
TU107853 other upstream 533263 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1247687 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1898034 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2128188 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3175135 4912708 ~ 4923404 (-) True G97040

Expression Profile