RNA id: TU107815


Basic Information

Item Value
RNA id TU107815
length 797
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G94768
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2242223 ~ 2249672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGGTGAGAGCAAGCTCAGTGAGAAGTCTCTGATTTTCCATGAACAAAGCCTCCTCGTTTTGTTTGCTTTGAGCTTGGAGTGCTTTCATTTGCAGATATAGCTTCTCATTCTCCTGATGGTAACCCTGAATCAGAGTCTCCTGTTCCTTCATCTCTTTCTCTATGAGCTTGAGTTTCTCTTCAGTCACAGGGTCCGAAGTTTCGCCAAAATTCCACTTTCGTCTGTTACTCGCCTCTTCGGCACGGTGTAGCTTGCTCTGTAACACATAATTCTCCTGCCTGAGTGCTGCCAGCTCTTGCTTGTGCTCCTCTTGTAACTGGTTTTCCCTCAGATGGAGCTCTCTTTCTTTTTGGGCGAGCTGAAGACGGAAACACTCCAGTGATGAGCGCTCCTGCTGAAAGGACGTGCCACCATCCATATTCTCTTGCATCACTTCAAGTCCTGTCACTGATTTGGGTGTGATCCTGTCTGCTCGGAGATGGCCATTATCCTTTAGACTGCTGGCTTGTACCTGATGCTGTAGGAATGTAGCAAAGGACTGCACAGATGTAACCAGTTCACTGCTTAGCCTTAAACTTGTGTCTAAACCTTTGACTGCTTGTGTTTGACTGAGGTTGTGAGTCTTTTTTAGGGTCTGGTTCTGAGTTTTCCTCTGTGTTAGTGGAGATGGAGGTTTAGCAGCTTGGCTGGTTCTGCTGGATGCAGGTCCTCTGGGTATCAGCCTGCTCTCAGGTTTTTTGGCCCTTGATGGAACAGGAGTTTTTCTAGATGAAGCAGATGCAAATGCATTGGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107791 lncRNA downstream 44728 2197265 ~ 2197495 (-) True G94751
TU107788 lncRNA downstream 61763 2180254 ~ 2180460 (-) True G94748
TU107697 lncRNA downstream 91634 2150363 ~ 2150589 (-) True G94674
TU107657 lncRNA downstream 163814 2072464 ~ 2078409 (-) True G94634
TU107462 lncRNA downstream 299913 1797629 ~ 1826281 (-) True G94460
TU107863 lncRNA upstream 183520 2433192 ~ 2446161 (-) False G94796
TU107864 lncRNA upstream 183520 2433192 ~ 2446161 (-) False G94796
TU107866 lncRNA upstream 183520 2433192 ~ 2446161 (-) True G94796
TU108201 lncRNA upstream 272049 2521721 ~ 2522003 (-) True G95091
TU108211 lncRNA upstream 278355 2528027 ~ 2537970 (-) True G95100
CI01000016_02120276_02136906.mRNA mRNA downstream 105038 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
CI01000016_01835869_01947822.mRNA mRNA downstream 294381 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_01689633_01693021.mRNA mRNA downstream 548551 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01659416_01671969.mRNA mRNA downstream 570254 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01653014_01654553.mRNA mRNA downstream 587664 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
CI01000016_02263634_02265929.mRNA mRNA upstream 13573 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
CI01000016_02288848_02311105.mRNA mRNA upstream 37625 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02328065_02334778.mRNA mRNA upstream 78140 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02467451_02477544.mRNA mRNA upstream 217779 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02568824_02575674.mRNA mRNA upstream 318938 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
TU107853 other upstream 21164 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 735588 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1385935 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1616089 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2663036 4912708 ~ 4923404 (-) True G97040

Expression Profile