RNA id: TU107853


Basic Information

Item Value
RNA id TU107853
length 671
RNA type TUCP
GC content 0.36
exon number 5
gene id G94786
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2270836 ~ 2276275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGCTCATAAACATAGATAGTAAGATACACAGCACTCAGTTCTCCTGTCTCCTCCAGCATGTTCACACGGCTGCTCTTTTTCTGGTTGACTGGGGCTTTACTGCTGCCCCTGAACTGGGGTACTGCATTTGTCAATGAAGAGGATGAAGACATGATACCAACACCAGACTATGACTACAATAACTTTACGTTCGACTACTATTCGTACAACGAAACATATGAATCGTATGAAATTCTCCGGAATACTGGAAATCAAGGGAATACGAATTCAGTTTCAGTGTATAAACACTATGGAATATTAGCAGGATTGCTGGTGCTGCAGATCTGCCAGCAAACATGAAAATGACAGTTGACAATGATATTATGCTGCTGATGTCATCTAAGAGGAAGGACTGGAACATCCTTTCACTGTCTGCACACTGTGGTATCAATACCGACATTTTCACTGAATTAAAGTCTGGAGCTTTGAAAAAAAAAAAAAAAAAAAATCCATATAGGCCTACTAAAAATTTGTGTGTTGTTGAAACTTTTATATCTGAATTGAAATGATCACAGATTGTATACTATTTTAGATGTCTATTCATTATCTACATTTTTCTAACAAATGTAACCTTTATTCTCACACTGTCATGCTTTTGCAAAAAATGTTGAAATAAATAATTTTTAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107815 lncRNA downstream 21164 2242223 ~ 2249672 (-) True G94768
TU107791 lncRNA downstream 73341 2197265 ~ 2197495 (-) True G94751
TU107788 lncRNA downstream 90376 2180254 ~ 2180460 (-) True G94748
TU107697 lncRNA downstream 120247 2150363 ~ 2150589 (-) True G94674
TU107657 lncRNA downstream 192427 2072464 ~ 2078409 (-) True G94634
TU107863 lncRNA upstream 156917 2433192 ~ 2446161 (-) False G94796
TU107864 lncRNA upstream 156917 2433192 ~ 2446161 (-) False G94796
TU107866 lncRNA upstream 156917 2433192 ~ 2446161 (-) True G94796
TU108201 lncRNA upstream 245446 2521721 ~ 2522003 (-) True G95091
TU108211 lncRNA upstream 251752 2528027 ~ 2537970 (-) True G95100
CI01000016_02263634_02265929.mRNA mRNA downstream 4907 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
CI01000016_02120276_02136906.mRNA mRNA downstream 133651 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
CI01000016_01835869_01947822.mRNA mRNA downstream 322994 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_01689633_01693021.mRNA mRNA downstream 577164 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01659416_01671969.mRNA mRNA downstream 598867 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_02288848_02311105.mRNA mRNA upstream 11022 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02328065_02334778.mRNA mRNA upstream 51537 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02467451_02477544.mRNA mRNA upstream 191176 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02568824_02575674.mRNA mRNA upstream 292335 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02589744_02622875.mRNA mRNA upstream 313200 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
TU108180 other upstream 708985 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1359332 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1589486 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2636433 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 3049244 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile