Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU107866 |
| length | 2930 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 5 |
| gene id | G94796 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 2433192 ~ 2446161 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU107815 | lncRNA | downstream | 183520 | 2242223 ~ 2249672 (-) | True | G94768 |
| TU107791 | lncRNA | downstream | 235697 | 2197265 ~ 2197495 (-) | True | G94751 |
| TU107788 | lncRNA | downstream | 252732 | 2180254 ~ 2180460 (-) | True | G94748 |
| TU107697 | lncRNA | downstream | 282603 | 2150363 ~ 2150589 (-) | True | G94674 |
| TU107657 | lncRNA | downstream | 354783 | 2072464 ~ 2078409 (-) | True | G94634 |
| TU108201 | lncRNA | upstream | 75560 | 2521721 ~ 2522003 (-) | True | G95091 |
| TU108211 | lncRNA | upstream | 81866 | 2528027 ~ 2537970 (-) | True | G95100 |
| TU108213 | lncRNA | upstream | 95422 | 2541583 ~ 2541802 (-) | True | G95102 |
| TU108214 | lncRNA | upstream | 95812 | 2541973 ~ 2542218 (-) | True | G95103 |
| TU108171 | lncRNA | upstream | 135097 | 2581258 ~ 2581720 (-) | True | G95061 |
| CI01000016_02328065_02334778.mRNA | mRNA | downstream | 97456 | 2327812 ~ 2335736 (-) | True | CI01000016_02328065_02334778 |
| CI01000016_02288848_02311105.mRNA | mRNA | downstream | 122087 | 2287297 ~ 2311105 (-) | True | CI01000016_02288848_02311105 |
| CI01000016_02263634_02265929.mRNA | mRNA | downstream | 167263 | 2263245 ~ 2265929 (-) | True | CI01000016_02263634_02265929 |
| CI01000016_02120276_02136906.mRNA | mRNA | downstream | 296007 | 2120156 ~ 2137185 (-) | True | CI01000016_02120276_02136906 |
| CI01000016_01835869_01947822.mRNA | mRNA | downstream | 485350 | 1835745 ~ 1947842 (-) | False | CI01000016_01835869_01947822 |
| CI01000016_02467451_02477544.mRNA | mRNA | upstream | 21290 | 2467451 ~ 2477544 (-) | True | CI01000016_02467451_02477544 |
| CI01000016_02568824_02575674.mRNA | mRNA | upstream | 122449 | 2568610 ~ 2575674 (-) | True | CI01000016_02568824_02575674 |
| CI01000016_02589744_02622875.mRNA | mRNA | upstream | 143314 | 2589475 ~ 2622875 (-) | True | CI01000016_02589744_02622875 |
| CI01000016_02679833_02695963.mRNA | mRNA | upstream | 232377 | 2678538 ~ 2695963 (-) | True | CI01000016_02679833_02695963 |
| CI01000016_02802780_02815803.mRNA | mRNA | upstream | 356438 | 2802599 ~ 2815803 (-) | True | CI01000016_02802780_02815803 |
| TU107853 | other | downstream | 156917 | 2270836 ~ 2276275 (-) | True | G94786 |
| TU108180 | other | upstream | 539099 | 2985260 ~ 2985641 (-) | True | G95070 |
| TU109910 | other | upstream | 1189446 | 3635607 ~ 3665313 (-) | True | G96628 |
| TU110003 | other | upstream | 1419600 | 3865761 ~ 3890326 (-) | True | G96690 |
| TU110416 | other | upstream | 2466547 | 4912708 ~ 4923404 (-) | True | G97040 |
| TU110385 | other | upstream | 2879358 | 5325519 ~ 5330846 (-) | True | CI01000016_05325805_05330265 |
