RNA id: TU108201


Basic Information

Item Value
RNA id TU108201
length 283
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G95091
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2521721 ~ 2522003 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTTTTTATTAAGGCAACGTATATTACATAATACGGATATATATCACTATAGTTATATTTAACCCGTCTGTTATTGCTGTGGAAAGAATCGCGCTTTTTCATGGCCTGTTGAAAGTACCTTGTTGATGCTTTTACACATTTAAATTTCCTTTTAATGTTCGTTGGTTGAAGGGTGAGTAGAATAATGTCATCTCATTGTACCCAGTTTAAAAATAAAATGTATTATTGCGTTCATAGAGCGAGCCTTTCACTGACTGTTTACAGCTTAACGGAAGTTACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107863 lncRNA downstream 75560 2433192 ~ 2446161 (-) False G94796
TU107864 lncRNA downstream 75560 2433192 ~ 2446161 (-) False G94796
TU107866 lncRNA downstream 75560 2433192 ~ 2446161 (-) True G94796
TU107815 lncRNA downstream 272049 2242223 ~ 2249672 (-) True G94768
TU107791 lncRNA downstream 324226 2197265 ~ 2197495 (-) True G94751
TU108211 lncRNA upstream 6024 2528027 ~ 2537970 (-) True G95100
TU108213 lncRNA upstream 19580 2541583 ~ 2541802 (-) True G95102
TU108214 lncRNA upstream 19970 2541973 ~ 2542218 (-) True G95103
TU108171 lncRNA upstream 59255 2581258 ~ 2581720 (-) True G95061
TU108232 lncRNA upstream 128904 2650907 ~ 2651108 (-) True G95121
CI01000016_02467451_02477544.mRNA mRNA downstream 44177 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02328065_02334778.mRNA mRNA downstream 185985 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02288848_02311105.mRNA mRNA downstream 210616 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02263634_02265929.mRNA mRNA downstream 255792 2263245 ~ 2265929 (-) True CI01000016_02263634_02265929
CI01000016_02120276_02136906.mRNA mRNA downstream 384536 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
CI01000016_02568824_02575674.mRNA mRNA upstream 46607 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02589744_02622875.mRNA mRNA upstream 67472 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02679833_02695963.mRNA mRNA upstream 156535 2678538 ~ 2695963 (-) True CI01000016_02679833_02695963
CI01000016_02802780_02815803.mRNA mRNA upstream 280596 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
CI01000016_02817855_02829699.mRNA mRNA upstream 295852 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
TU107853 other downstream 245446 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 463257 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 1113604 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1343758 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2390705 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2803516 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile