RNA id: TU108232


Basic Information

Item Value
RNA id TU108232
length 202
lncRNA type inter_gene
GC content 0.24
exon number 1
gene id G95121
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2650907 ~ 2651108 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACATGACAAACTAAAATATTTTGTCAATAAAAGACAATAATTATTTTTTTCATATAAAATAATAGCATTTTTTAGAAATTCAAATTTAAATAATTTTGTAGTTTGACAATGAACACTCTGTAAAACACAGCTATACAGCACTGGTCAAAACAATACACCCAAACAGATGAAGAAACATATTCAGACATTCATAAAAACACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108171 lncRNA downstream 69187 2581258 ~ 2581720 (-) True G95061
TU108214 lncRNA downstream 108689 2541973 ~ 2542218 (-) True G95103
TU108213 lncRNA downstream 109105 2541583 ~ 2541802 (-) True G95102
TU108211 lncRNA downstream 112937 2528027 ~ 2537970 (-) True G95100
TU108201 lncRNA downstream 128904 2521721 ~ 2522003 (-) True G95091
TU108243 lncRNA upstream 54362 2705470 ~ 2707051 (-) True G95132
TU108149 lncRNA upstream 69018 2720126 ~ 2726237 (-) True G95044
TU108248 lncRNA upstream 82640 2733748 ~ 2734245 (-) True G95136
TU108250 lncRNA upstream 105763 2756871 ~ 2757185 (-) True G95138
TU108251 lncRNA upstream 107419 2758527 ~ 2758740 (-) True G95139
CI01000016_02589744_02622875.mRNA mRNA downstream 28032 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02568824_02575674.mRNA mRNA downstream 75233 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02467451_02477544.mRNA mRNA downstream 173363 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02328065_02334778.mRNA mRNA downstream 315171 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02288848_02311105.mRNA mRNA downstream 339802 2287297 ~ 2311105 (-) True CI01000016_02288848_02311105
CI01000016_02679833_02695963.mRNA mRNA upstream 27430 2678538 ~ 2695963 (-) True CI01000016_02679833_02695963
CI01000016_02802780_02815803.mRNA mRNA upstream 151491 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
CI01000016_02817855_02829699.mRNA mRNA upstream 166747 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
CI01000016_02884294_02912568.mRNA mRNA upstream 231738 2882846 ~ 2912568 (-) True CI01000016_02884294_02912568
CI01000016_02936606_02957342.mRNA mRNA upstream 285001 2936109 ~ 2957875 (-) True CI01000016_02936606_02957342
TU107853 other downstream 374632 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 334152 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 984499 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1214653 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2261600 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2674411 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile