RNA id: TU108265


Basic Information

Item Value
RNA id TU108265
length 436
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G95153
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2774594 ~ 2775029 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAGTATATCATTAGTAATTTATAAGGACGCAAAGGGATCCTTTTCCTGAAAATGAATAAATAATGACAGAATTGTAATTTTAAGGTGAACTATACCTTTAACAGGGCTTTGTTGTGAATAAAACCCCAAATCTTGACTATTTATGCCCCCATGGGACCTAGCCTGGCTAGCAGATGTCAAATTCTCATCCCAGATCACCCTCAACCTCCATGCTCTGCTGCTCTGTTGCTTTGCTTCCTGGTTTCCACTCTCCTCCCAAAGGATGCCTGTCCTCACAGACATCCTCACTGTAAAAACACACAATCCTTTCCTTTGTGCTATAGCGCGCTGTATGTACAAGGAGGTAGACTTACTGTCTGACTCCTGTCACCCAAAGAGTGTTCTTACAGATGTTGAATGTAATTATATACCTGGCAGGTTCTATTCTCTTTTATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108264 lncRNA downstream 876 2773510 ~ 2773718 (-) True G95152
TU108263 lncRNA downstream 1091 2773258 ~ 2773503 (-) True G95151
TU108262 lncRNA downstream 1877 2772502 ~ 2772717 (-) True G95150
TU108261 lncRNA downstream 2102 2772035 ~ 2772492 (-) True G95149
TU108260 lncRNA downstream 2963 2771403 ~ 2771631 (-) True G95148
TU108266 lncRNA upstream 416 2775445 ~ 2775866 (-) True G95154
TU108269 lncRNA upstream 63226 2838255 ~ 2838520 (-) True G95157
TU108270 lncRNA upstream 64441 2839470 ~ 2839694 (-) True G95158
TU108273 lncRNA upstream 73650 2848679 ~ 2848903 (-) True G95161
TU108278 lncRNA upstream 89740 2864769 ~ 2865131 (-) True G95166
CI01000016_02679833_02695963.mRNA mRNA downstream 78631 2678538 ~ 2695963 (-) True CI01000016_02679833_02695963
CI01000016_02589744_02622875.mRNA mRNA downstream 151719 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02568824_02575674.mRNA mRNA downstream 198920 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02467451_02477544.mRNA mRNA downstream 297050 2467451 ~ 2477544 (-) True CI01000016_02467451_02477544
CI01000016_02328065_02334778.mRNA mRNA downstream 438858 2327812 ~ 2335736 (-) True CI01000016_02328065_02334778
CI01000016_02802780_02815803.mRNA mRNA upstream 27570 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
CI01000016_02817855_02829699.mRNA mRNA upstream 42826 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
CI01000016_02884294_02912568.mRNA mRNA upstream 107817 2882846 ~ 2912568 (-) True CI01000016_02884294_02912568
CI01000016_02936606_02957342.mRNA mRNA upstream 161080 2936109 ~ 2957875 (-) True CI01000016_02936606_02957342
CI01000016_02991852_02994428.mRNA mRNA upstream 216191 2991220 ~ 2994428 (-) True CI01000016_02991852_02994428
TU107853 other downstream 498319 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 210231 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 860578 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1090732 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2137679 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2550490 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile