RNA id: TU108500


Basic Information

Item Value
RNA id TU108500
length 1021
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G95376
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3398182 ~ 3404860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGTGATGCAGCAGCAGATGTCTCCCTGATTAAAGCTATATTCTTGTCATTTCATGCCAAAGAGGCCATCGTCTACGGAAGACTCCAATTATCAGTTACTGTGTGAGGAATTCATGCATCACAACTTGGTTGAAAAAAAAGGGGAAAAAGCAGAAAAAAATGTCCTGTTTCATGTTCCTCCAAGACCATTCTACATCACCTCTCCCCTTCAGAAGGAAGGCACAGAAACATCCATTAGTGAGATTGTTTTTCCTGCAACACCCGCAATACACGGAGTAACAAGTTGCTCCCAGACTGAAGACCCGTAGGGCCCTTGCTGCACACATCAACTCAGAAATTGGATTTCTTCCTTTTTCTTTTCACTATTTCTTGTTATTGGTATTGTTGTTCCCTTGTCTTTTTTCTTTTGTTCTCAGCGTTTTGCTTCAGTTTCAAGGAGACATTATGTCATTCATTTAGTAATGCTGTCGCACAAGTTGAAGATGTGATGCAGGTGTCCATTTTAAGCATTACATCAGCATCAAAACCCTATCATCTGGAGAGAAAGTAGGACCTTTCAGAATATATTAACCAAAGCTATTTTTAAATCACTTTTACAATCTATGTATTTGCAAAGACCTTGGAGCATGTTATTGAATTAAAATCAGCGACAAACCTGCAACAATGGGACTCAATAATTGTGATATGGGTTGAATGACGCATTATGAATATGTATCAAATTTAGCAGCAGGCCATTATGCAAAACAGAGGTCCTATAACACAAGCATCTCTCACACAGGTGGTTATTCCATATTGTGGGTGACCCAGCATGCCAGATCTCCAACAAGACTACTCTTTATAGGTTGCGTCTCACAAGGACCCTCTCATAATGGTATAATTTACCCATTAATGACACATGTTGTCCCTCGCCACTGACTGCGCACTGTCATTAATGAGGCCATTTGCATTTGGTGGCAGTCTGCCAGTCGAGGCTCTCCGCCATGTTTGCTGAATGAGTCCTTTCAAACCGCAGACTCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108432 lncRNA downstream 73355 3325912 ~ 3326175 (-) True G95315
TU108430 lncRNA downstream 74848 3324367 ~ 3324682 (-) True G95313
TU108429 lncRNA downstream 77164 3322080 ~ 3322366 (-) True CI01000016_03322103_03326683
TU108327 lncRNA downstream 293082 3105760 ~ 3106448 (-) True G95210
TU108320 lncRNA downstream 307779 3091365 ~ 3091751 (-) True G95203
TU108506 lncRNA upstream 1572 3406432 ~ 3406702 (-) True G95380
TU108513 lncRNA upstream 6379 3411239 ~ 3411521 (-) True G95387
TU109836 lncRNA upstream 31350 3436210 ~ 3437197 (-) True G96569
TU109864 lncRNA upstream 106443 3511303 ~ 3511652 (-) True G96592
TU109869 lncRNA upstream 123691 3528551 ~ 3528890 (-) True G96597
CI01000016_03322103_03326683.mRNA mRNA downstream 68768 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 314872 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 319490 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 330438 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03062846_03063013.mRNA mRNA downstream 336258 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03555967_03558776.mRNA mRNA upstream 150440 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03647744_03675574.mRNA mRNA upstream 242793 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 314307 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 429640 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 475633 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
TU108180 other downstream 413889 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1123255 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 230747 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 460901 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1507848 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1920659 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 2007399 5415682 ~ 5418217 (-) True G97020

Expression Profile