RNA id: TU109864


Basic Information

Item Value
RNA id TU109864
length 350
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G96592
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3511303 ~ 3511652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGAAATATGTCAGTGCTGTGAACTCAAAAGAAAAAGAAAGTTCTAAATACTCATAACAGTTAATTTAACTGAACTAATTTGTTCAATTTAAGTTTGCCCTACTCAAAACAATTAAGTATTTTGAGCATTAGGGTTTACAGTGTAGTGCTTCATACAATACAGATTGTTTCAAAGCAGCTTTACAGTGATAAACAGGAAAATAACAATTCAATAATGCAAAAAACAGCCACTGGTCCAGTCACTCCACCTCGGCCCGTCAACCTGTTGGCTCCACTATGGCTCCTCCCTCCCTCAGCTCCACCAGTGGCCATCTTCCTTACGGCTTCACCGGGCTCCCTCGTTCCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109836 lncRNA downstream 74106 3436210 ~ 3437197 (-) True G96569
TU108513 lncRNA downstream 99782 3411239 ~ 3411521 (-) True G95387
TU108506 lncRNA downstream 104601 3406432 ~ 3406702 (-) True G95380
TU108500 lncRNA downstream 106443 3399530 ~ 3404860 (-) True G95376
TU108502 lncRNA downstream 110346 3398182 ~ 3400957 (-) False G95376
TU109869 lncRNA upstream 16899 3528551 ~ 3528890 (-) True G96597
TU109871 lncRNA upstream 18923 3530575 ~ 3530946 (-) True G96599
TU109872 lncRNA upstream 19934 3531586 ~ 3531789 (-) True G96600
TU109883 lncRNA upstream 28134 3539786 ~ 3540027 (-) True G96606
TU109886 lncRNA upstream 32221 3543873 ~ 3544155 (-) True G96609
CI01000016_03322103_03326683.mRNA mRNA downstream 180541 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 426645 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 431263 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 442211 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03062846_03063013.mRNA mRNA downstream 448031 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03555967_03558776.mRNA mRNA upstream 43648 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03647744_03675574.mRNA mRNA upstream 136001 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 207515 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 322848 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 368841 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
TU108180 other downstream 525662 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1235028 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 123955 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 354109 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1401056 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1813867 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1900607 5415682 ~ 5418217 (-) True G97020

Expression Profile