RNA id: TU109871


Basic Information

Item Value
RNA id TU109871
length 372
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G96599
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3530575 ~ 3530946 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCATGACGAACAGGACATTTGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACAGCGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAGTTGTTTTCTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACGTTGATCCGCAACCATGGTGTGCTGTAGTCCGTTTATAGCCTACTGTTAGCTTTTTATATCTGATGACTTTATTTAGGCTTCAAAATGTATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGTCTATGGGAAAAATGCATTGGCTTTCGATCGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109869 lncRNA downstream 1685 3528551 ~ 3528890 (-) True G96597
TU109864 lncRNA downstream 18923 3511303 ~ 3511652 (-) True G96592
TU109836 lncRNA downstream 93378 3436210 ~ 3437197 (-) True G96569
TU108513 lncRNA downstream 119054 3411239 ~ 3411521 (-) True G95387
TU108506 lncRNA downstream 123873 3406432 ~ 3406702 (-) True G95380
TU109872 lncRNA upstream 640 3531586 ~ 3531789 (-) True G96600
TU109883 lncRNA upstream 8840 3539786 ~ 3540027 (-) True G96606
TU109886 lncRNA upstream 12927 3543873 ~ 3544155 (-) True G96609
TU109887 lncRNA upstream 14173 3545119 ~ 3545335 (-) True G96610
TU109882 lncRNA upstream 18469 3549415 ~ 3554643 (-) False G96605
CI01000016_03322103_03326683.mRNA mRNA downstream 199813 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 445917 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 450535 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 461483 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03062846_03063013.mRNA mRNA downstream 467303 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03555967_03558776.mRNA mRNA upstream 24354 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03647744_03675574.mRNA mRNA upstream 116707 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 188221 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 303554 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 349547 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
TU108180 other downstream 544934 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1254300 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 104661 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 334815 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1381762 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1794573 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1881313 5415682 ~ 5418217 (-) True G97020

Expression Profile