RNA id: TU109893


Basic Information

Item Value
RNA id TU109893
length 2077
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G96614
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3623837 ~ 3626004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGAATACAAAAAAAATAAAATAAAAGGAGCCATAACTTCAGGGTGCCCCAAGGCCAAAACAACAAACAAAATAGCTTATAAAACAAAATAAATAAATACCCTAACAAAAGAAACAAAAATACAATCAACTTCCCTAACTCCCTAAAACAAACAAATCGCAAACAAAGTCAAAATAAATGGCAGGACACCCCTACGCTCCTAAAGCATAAACAGAAACTTAATTAGATAACTTCAAACAAAAACAGGAACAGTGGTTCAAGATCTGCCGACGGGAGAAGGAACCTGGAGCTCCTCACGCCAGCAGGCCAACGCCAGAATGAGCTCGCCATCTTCCGAGAGCACCGCCCTTTTAAACGGAGCAGCCGCAGGCACAGCCAATGACCTTCTGACTGCAGCAACCAATCCCTGCACAAACATTTAAAGAGCAAAAACTCCACACAAAAAACAAACAAAACAGATGCCGAATATCGTAACACTCCCTATACCCTCATTCACTATTCCCTATATTACTCCACTAATATAGTCCACTTGAGGGAGTGAATGACAGCGAAAAGGCTGCTACTTTTGCATAGTTTGTGCTTGCTGTTTAATAATCATTTGAAACTTAGTAACTAGCAAACTAGCATGTATAAACCTTAATTAAACAATTTAATAATTAAAAATAAATTTATACCTGAATGATATTACGCTGTAGCTACATTGAACCAGCAGTTTGGAAAATGGATGGATGGATGATTCAGCCGCGGGTGTCATCTTCAGGTCAGATGCGGGAATTCATTCAGCGCACGACTCTCACGGTGCATTATGGGTATTCTCTAGCCGTTGAGTGTACATCAGTTGGATACTCATTGTTGCGGTGCATTATGGGATTGAATGAGTGCACTCGATAACATCCACTGGTTTCGGACACCACTACAAATGGCTGTCCCCTCATATAGTGCCCTATTTAAGGGTATAGGGGGCGATTTCGGACATAGCCTTAGTTTCCTAGCGTGTGCCAGTTAGTTACTAATTTAGTTCACCTGTTGTTCATTTAGCTTCCTTGTTTACCCCTGTGTATTTAAACCGTGAGTTCTGTCTGTTCTTTGTTCCGTGTCATCTGTATGTAGAGTGTGATCATGGTTATTTGCTAATTTTATTAAAGACTTTGAATCAGTACTTCCTTGTGTGTTTTGACTAAAACACTCCAGAAATCAGGCATCACACAAAACTGAATGTGATTAAAAATACAAGCATACGAGTTTGGAATGGCATGACAGTATGTCACTTATTCCTAAAGTGCTGATTGCCGCTAAATAAATTCAGTCTGTCTTTGTACATTTACCAAACACATGCTCACCCTCTATTAAGAAGTAGGTAACACAGCGGCCGTGGGGTTACCGGATCTTTGGACGTCCAATCACAGCGGACCTTACTAGTGTGAAACTTCCTGTAGCAAAAGACAGTGGGTCTCTCTGGAGGCGCCCTACGCTGATTTTGAATGTGGAAATGAGTCTCTCTCCTCTGTAGCAGCTGTAATTCCCAGCATCTGCCAAGCTGAGATGCGGACGTCTTAAAATCCCACCCCTTTCCACACCAACATGCACTTGTCGTCCATTGAGAGTCCAGCGTGTTCGCTTTTTGATGCCTCGTGTAACCCTGGAGCCTTCCTCTTCATAATCATAGTCCTCATAATCATCTAGATCAGGATCTGTGCCCATGGTGATACCGAAGGCCTCTTCTTCATGTCCAGCAGTTTGACTGACAGCACGCAAAACTCGTCTAGAAGTGCTTTGTTCCTTTCTTATGGCTACAGGGGGTTTCATAGTGACCGTCGTGTCCCCTTTAGTTTTGGTATACATACCAGAATCAGTCTTTTGGTATGTTCCAATTGTAGCATCTCCCTTCATACTGGTTATTTGTGTAGCATTAGCATAAACTCTTTTGGATGTCCAGCTGACAGTGATGTCTTCTCTCTGCTTGTTTCTGTATTTTTTATTCATGACACTGGTCGAAGCCAACAGCACGTCGTCCACAGTGACATGGCCTCTGCAGCCAAGCACAACATTGCTTCCTAATTTCAAGACCAAAACTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109949 lncRNA downstream 14960 3608336 ~ 3608877 (-) False G96655
TU109948 lncRNA downstream 14960 3608570 ~ 3608877 (-) True G96655
TU109926 lncRNA downstream 42408 3581219 ~ 3581429 (-) True G96644
TU109919 lncRNA downstream 60099 3562854 ~ 3563738 (-) True G96637
TU109882 lncRNA downstream 69194 3549415 ~ 3554643 (-) False G96605
TU109952 lncRNA upstream 8255 3634259 ~ 3634460 (-) True G96658
TU109908 lncRNA upstream 108521 3734525 ~ 3800968 (-) True G96626
TU109904 lncRNA upstream 154800 3780804 ~ 3786775 (-) True G96622
TU109890 lncRNA upstream 161402 3787406 ~ 3791803 (-) True G96612
TU109978 lncRNA upstream 183506 3809510 ~ 3811499 (-) True G96672
CI01000016_03555967_03558776.mRNA mRNA downstream 64651 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 293075 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 539179 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 543797 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 554745 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03647744_03675574.mRNA mRNA upstream 21649 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 93163 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 208496 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 254489 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03921124_03930996.mRNA mRNA upstream 294051 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
TU108180 other downstream 638196 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1347562 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 9603 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 239757 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1286704 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1699515 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1786255 5415682 ~ 5418217 (-) True G97020

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020864 False 4005 mRNA 0.38 10 NC_007127.7 22177254 ~ 22194400 (-)