RNA id: TU109952


Basic Information

Item Value
RNA id TU109952
length 202
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G96658
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3634259 ~ 3634460 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAAGACTATTGTGTTTTTGTCACATAGAAACATGAATTTGCTGTAAAGCTGCTTTTGAAATATGTATAGTGAAAAGCGTTATACAAGTGAATGTGAATGTGAAAGAGCCCTTGGATTGTTGGTTACTGTACCATTTTGAAGTTATGGACCCAATCTCACACTACAGTTTGGAGAGCCATTACATTGTTGGCTCATTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109893 lncRNA downstream 8255 3623837 ~ 3626004 (-) True G96614
TU109949 lncRNA downstream 25382 3608336 ~ 3608877 (-) False G96655
TU109948 lncRNA downstream 25382 3608570 ~ 3608877 (-) True G96655
TU109926 lncRNA downstream 52830 3581219 ~ 3581429 (-) True G96644
TU109919 lncRNA downstream 70521 3562854 ~ 3563738 (-) True G96637
TU109908 lncRNA upstream 100065 3734525 ~ 3800968 (-) True G96626
TU109904 lncRNA upstream 146344 3780804 ~ 3786775 (-) True G96622
TU109890 lncRNA upstream 152946 3787406 ~ 3791803 (-) True G96612
TU109978 lncRNA upstream 175050 3809510 ~ 3811499 (-) True G96672
TU109981 lncRNA upstream 185207 3819667 ~ 3820628 (-) True G96675
CI01000016_03555967_03558776.mRNA mRNA downstream 75073 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 303497 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03082653_03084658.mRNA mRNA downstream 549601 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
CI01000016_03072793_03080040.mRNA mRNA downstream 554219 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03064633_03068201.mRNA mRNA downstream 565167 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03647744_03675574.mRNA mRNA upstream 13193 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03719404_03722988.mRNA mRNA upstream 84707 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03834829_03843163.mRNA mRNA upstream 200040 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03881771_03883341.mRNA mRNA upstream 246033 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03921124_03930996.mRNA mRNA upstream 285595 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
TU108180 other downstream 648618 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1357984 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 1147 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 231301 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1278248 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1691059 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1777799 5415682 ~ 5418217 (-) True G97020

Expression Profile