RNA id: TU110051


Basic Information

Item Value
RNA id TU110051
length 2334
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G96728
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3969511 ~ 3971844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGAATGACAAAAATGTCTTTATTTTAGCTAAAAAATTATACTTATAACTATCACAGTCTTACAGTACATAGGCTACAAACAAGAAAACCCAGAACTCACCACAATATAGCAAGAATATGCCAACAATACATGGCCAAAAACTGATCAAACATCAGGGGAAAACACTAAACAGTTTGGAAACATAGCGACACCTAGTGGTCACTTTCAAAAAGTCTTGAGTGTCTTATAATTGCAATGTTTAAAGTCTAATGTACAGAAAATAATGATCTCTCCCTCTCCAAGTATCAAGGAAATGCACTCAAAATTGAAATAAGTGGTAAACAGTTAATATTATTTTGATCCACTTCAAATGTTGACTACTATATATTTAAGAGTTATATATATGTGTGAAAAAACACAACTCTTGGTGTCCAATTCTGTGATTTCCAAAGAAAACATGTTTGTTATATAAACTCTCCTGGTCATTTTCTCCGATTAGAAGTGTCTCTGCACACTGATAAACACAGTATCTACTCACATTACTCTCTTTGACATATTTTCTGCTGGAGTCCCAGATTGTCACATATATCAGCACCTAAACATCAATAGACACATAGTGAACCAAGATACGATCTGTGAGAGTATAGTATAAAGGTAATGAAATACCAAATTAATGTTTTAATAAAGAAAGGATTTTGTGTAGTGTTACGTTGGAAGATGTAAGTTTTGTGTATTAGTGTTCTTTTCTCTCCTTGTCTTGACGGGAGGAGCATCATTTAAAAAAAACAGAAGGTGGATGCTGTGGATTGTAGCAGTTGGAAACGCGATTTACGGTGATTTAGTTATTCTTGAGTGTTAGATTGTGTATCAGTGAGAGCAGTGAGTGATAGTGTGGATGTATTGTGATTTTCTTTCTCTATTCATCTTTGTATTGTTTTTTATTACTATTCATTGTTTTTGGCTACTGTGACATGTAAATACTTGTTGTGTATATGCCTGTTACTTTCACAGAAGCTGTAGGGGTTGGGTGCCATTTCTTTCTTTCTTCCTTATTTTCATCACCATTTTTACCTCTTGTTTATTACTAGTTAAAAAGGCCATGAAGCTCTCCATATTTTTGTTACATTTCTTTCTCTTTTTTTCTTTCTTTTTTTTGTTGTTAGGAAAGTTTTATCGTCAGTGGTGTTTGATTATTTATGATGAACCATGCTAAACACAGCACATCTACTGTTGATCTATAACTGATCATCTTTGTTGTTTAATCTATTACACCAAAATATCTTAAACTGCTCAGTTGAGTTCATTTTGTTCCTGTTGACAGAGTCTGCATTTTAATGCAGCTATATTTATATTACATTTCTATGATATAACCTGAAAAGGAGTTTAAGTATTTGTTATAAAATATAAAGAGTTATGAAAAGAAAAGAGTTATGAGAAACAGAGAGAAATCAGTTCTATTTAGAGACTGCTTTTACAAGAAAACTGTGATCTACAGTTTTTTTCTACAGATTTTCATGCACATTCAGGAATAAAAGATTATTTACAAATGTCACACTGACTTTGAGATCATGACATCAGTGTCAGGAAGAATAAACTAAGCATGTTCAAACTTGCAGACTTCATTCCAGTTTAGCTCAATTTAAACATTTTTTATATGTATGTAAATATATATTTAAATAGAATTTTTTTCGCAGATGTCTTATAAAGCGTGTAGAAATGTGTTTACCGGTGAGAAATGAGCAGACGATTATCAGTCCCAGAAGAAACAAATGACACTTTTCAGCCATTTTCTTCCTATTCGTTAAACATTATCAGCTCCTCCTCTGTCTGTAGCTTCCTGTGATCACAGAATGTCTTTGGAACAGACTGCCTTGAGCCCCTGCCCCGTGAAAGTGAAAGTGCTCACGCGGTCCCAATTTTCCTGTCCCCCGGAACGTGATTTCGCCCTCGCGGAGGTCTGTGAATCCTCACCAACTGTTTGTCTGATCCATGTTAAGAACAAATAACAGGGTTTACTCATTTAGCTCGGTTTCCAAAATAAATACGCATGTTTTGTTTTATTTCACTAATCGTTATCTGAGCAAATTATCAGAATAATATTAATATTATGCTTTTCATTTTTTTTTTAATATATATATTTGTAATATGGGATATAAATGTCAATTTGGGATATAAATAGGACACCTATTGTCATATGAATAAGTATTTTCTGCATTTGGATTTATGATCTAATTTTTAGGATTTTAAGAACATGCTAAGGAGTGTTAATCAACATAACCTAAACAGTTTATGTTTTCTCATTTTCTCCTTAAATAAAACAAATCCTGCTGCTGACAATGCAGACTCATATGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110041 lncRNA downstream 1614 3967342 ~ 3967897 (-) True G96719
TU110008 lncRNA downstream 16529 3896035 ~ 3952982 (-) True G96695
TU110001 lncRNA downstream 56063 3890120 ~ 3913448 (-) True G96690
TU109996 lncRNA downstream 66753 3863165 ~ 3902758 (-) True G96686
TU109997 lncRNA downstream 81753 3862069 ~ 3887758 (-) True G96687
TU110052 lncRNA upstream 1963 3973807 ~ 3974048 (-) True G96729
TU110045 lncRNA upstream 8860 3980704 ~ 3984004 (-) False G96723
TU110046 lncRNA upstream 8860 3980704 ~ 3983883 (-) True G96723
TU110047 lncRNA upstream 14958 3986802 ~ 3988814 (-) True G96724
TU110059 lncRNA upstream 20767 3992611 ~ 3992823 (-) True G96736
CI01000016_03921124_03930996.mRNA mRNA downstream 38349 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_03881771_03883341.mRNA mRNA downstream 86045 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 126245 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 246453 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 293926 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_04044171_04047247.mRNA mRNA upstream 72171 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 112880 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 209419 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 254595 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 292085 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
TU110003 other downstream 38460 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 304198 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 983870 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1693236 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 940864 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1353675 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1440415 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2187142 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4916989 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile