RNA id: TU110046


Basic Information

Item Value
RNA id TU110046
length 1436
lncRNA type antisense_over
GC content 0.34
exon number 6
gene id G96723
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3980704 ~ 3984004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGACACTGGGTGTGATGTTATATTATTGAAATTGTTGAGTTGTGTTTGATTGTGCTAATCGAAATTAGCAGTTAGCATTTGCAAGTTACTGGTCTTTGGCTGCATGTTTTGAATAAAGGAACTTTTTTCATGTTTTAGATATTTTTATTATGTGTACAATGTAGACTGGGGAAAACTTTACTAATTACTCTACTGATTTCAATTTGGATGCTAGTTTAGGTGTGTTGTACAGGGATGTTATAATTAGTTTTTTTTTTGTTTTTTTAGATTTCTTAAGATTAAAATGTTTGAAGACTACACAATGGATCTGTTTTGTGGAATGAGATATGCATTGGAAATATCAATGCAGAGTTCAATCACATCACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGCGCTTTATCAACTTGCAGCTTGATTTCTGGAAATTTGTGCAGTTGAAAGTGGCAGTTGAAAAGAGAGTTTATTGCGCAAATTAAATCTATGCACTGACATCACTGCTAAGTGCACAGTTCTTCATGGCCTTCCTCTCATTCTTGGAGAAGAAACCTCTGATTTTTTTAAACATTGCTGACAGGACTGTGATTGTGACACACCCTTCTTCAGGATTCTGACCGTGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTATCATGGATGAACTTGAAAACCTTCCAGGTGCCATGTGACTAATTTCTGGACTGATATGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTACATTTACTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTGTTTGAGATCGTTAAAGGCTTAGTTCACCCAAAAATGTAAATTCTGTCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCACTCACAAACTTAGATATTTTTAAAGAAAACAGGCTGGAAAACTTTTTGGATCTTTTAAGTTTTGGTTACCTGGACTTTCAGTTGGAGGGACAGAAACCTCTCAGATTTCATTAAAAATAATTTCATTTATGTTTCAAAGTCTAACCAAAGTCTTATGAGTTTGTGACATCATGAGGGTGAGTAAATGATGAGAGAATTTCTTTTTTTTTTTTGCGAACTATCGCTTTAATCTTGCTGTTGCACTAAAGCCAACATTCTTTTTAATTAAAGTGTTAAATTGTCACCTGCCAAAGTTTAAACTGTCAAAATTAAGCTAACATTGATTTTTGTTTCATGGTCTGCTATTCAGTTTCTTGTCAAAAGACTGTTAGTATTATTGGTTTATTCATCAGTCATGATTTGTAATGCATATTGTTACATTAATGAAAAATGTTTAGAATTAGGGGTGCCAGAATGGCATTGTTTGGTACATTGTAGTATCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110052 lncRNA downstream 6656 3973807 ~ 3974048 (-) True G96729
TU110051 lncRNA downstream 8860 3969511 ~ 3971844 (-) True G96728
TU110041 lncRNA downstream 12807 3967342 ~ 3967897 (-) True G96719
TU110008 lncRNA downstream 27722 3896035 ~ 3952982 (-) True G96695
TU110001 lncRNA downstream 67256 3890120 ~ 3913448 (-) True G96690
TU110047 lncRNA upstream 2919 3986802 ~ 3988814 (-) True G96724
TU110059 lncRNA upstream 8728 3992611 ~ 3992823 (-) True G96736
TU110071 lncRNA upstream 19462 4003345 ~ 4065351 (-) False G96742
TU110067 lncRNA upstream 78842 4062725 ~ 4065351 (-) False G96742
TU110068 lncRNA upstream 78842 4062725 ~ 4065351 (-) False G96742
CI01000016_03921124_03930996.mRNA mRNA downstream 49542 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_03881771_03883341.mRNA mRNA downstream 97238 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 137438 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 257646 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 305119 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_04044171_04047247.mRNA mRNA upstream 60132 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 100841 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 197380 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 242556 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 280046 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
TU110003 other downstream 49653 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 315391 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 995063 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1704429 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 928825 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1341636 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1428376 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2175103 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4904950 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile