RNA id: TU110059


Basic Information

Item Value
RNA id TU110059
length 213
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G96736
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3992611 ~ 3992823 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCGCTGCTGATCTGCCTTGGGGGTTTCTGGTTCTATCTGCCTGGCTCTGGTGGTCGTCGGCTCCACCCTGGAAACATTCTGTCCAGCGTGCACCACCCTGTCCAGCCTGCTTCTCTCTGGAGACTTTTTGTCCCACCTGCTCCACCCTGGAGACCTTCTGTCCTGCCTGTTCTGCCATGGAAATCTTCGGTCCTGTGTGCTCTGCTCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110047 lncRNA downstream 3797 3986802 ~ 3988814 (-) True G96724
TU110045 lncRNA downstream 8607 3980704 ~ 3984004 (-) False G96723
TU110046 lncRNA downstream 8728 3980704 ~ 3983883 (-) True G96723
TU110052 lncRNA downstream 18563 3973807 ~ 3974048 (-) True G96729
TU110051 lncRNA downstream 20767 3969511 ~ 3971844 (-) True G96728
TU110071 lncRNA upstream 10522 4003345 ~ 4065351 (-) False G96742
TU110067 lncRNA upstream 69902 4062725 ~ 4065351 (-) False G96742
TU110068 lncRNA upstream 69902 4062725 ~ 4065351 (-) False G96742
TU110069 lncRNA upstream 69902 4062725 ~ 4065351 (-) False G96742
TU110070 lncRNA upstream 69902 4062725 ~ 4065351 (-) False G96742
CI01000016_03921124_03930996.mRNA mRNA downstream 61449 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_03881771_03883341.mRNA mRNA downstream 109145 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 149345 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 269553 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 317026 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_04044171_04047247.mRNA mRNA upstream 51192 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 91901 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 188440 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 233616 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 271106 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
TU110003 other downstream 61560 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 327298 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1006970 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1716336 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 919885 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1332696 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1419436 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2166163 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4896010 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile