RNA id: TU108760


Basic Information

Item Value
RNA id TU108760
length 201
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G95622
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3993274 ~ 3993474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGCACAGAGGAAAATGGGACGACGATCTCAGGAACCAGAGAAGTGTCAGCAGAAATACTCTGTAACGGTTTTGGAACACCGGCTGGTGGATCAGAGGTGGATCTGCCAAATTAGCTATCAAGCCCCAACGTGGATAGGAGGCCTTGGCATCCTCAATCGCTGCGTCATCGACACCCGGGAACACAGGGATAGTGTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108759 lncRNA upstream 13 3993037 ~ 3993261 (+) True G95621
TU108626 lncRNA upstream 4163 3986772 ~ 3989111 (+) True G95500
TU108624 lncRNA upstream 26854 3934237 ~ 3962006 (+) True G95498
TU108591 lncRNA upstream 187274 3804708 ~ 3806000 (+) True G95465
TU108725 lncRNA upstream 223047 3769802 ~ 3770227 (+) True G95588
TU108761 lncRNA downstream 332 3993806 ~ 3994081 (+) True G95623
TU108764 lncRNA downstream 7307 4000781 ~ 4001100 (+) True G95626
TU108571 lncRNA downstream 83909 4077383 ~ 4181941 (+) True G95445
TU108787 lncRNA downstream 378107 4371581 ~ 4371833 (+) True G95649
TU108788 lncRNA downstream 379512 4372986 ~ 4373220 (+) True G95650
CI01000016_03977127_03981586.mRNA mRNA upstream 10706 3977079 ~ 3982568 (+) True CI01000016_03977127_03981586
CI01000016_03965750_03967383.mRNA mRNA upstream 25877 3965498 ~ 3967397 (+) False CI01000016_03965750_03967383
CI01000016_03951956_03957698.mRNA mRNA upstream 35392 3951410 ~ 3957882 (+) True CI01000016_03951956_03957698
CI01000016_03942653_03949757.mRNA mRNA upstream 43354 3942483 ~ 3949920 (+) True CI01000016_03942653_03949757
CI01000016_03912450_03917198.mRNA mRNA upstream 76055 3911862 ~ 3917219 (+) True CI01000016_03912450_03917198
CI01000016_04008568_04016209.mRNA mRNA downstream 15046 4008520 ~ 4016502 (+) True CI01000016_04008568_04016209
CI01000016_04019056_04035116.mRNA mRNA downstream 25536 4019010 ~ 4035238 (+) True CI01000016_04019056_04035116
CI01000016_04038553_04043435.mRNA mRNA downstream 45030 4038504 ~ 4043574 (+) True CI01000016_04038553_04043435
CI01000016_04054332_04058529.mRNA mRNA downstream 60547 4054021 ~ 4058698 (+) True CI01000016_04054332_04058529
CI01000016_04062946_04083356.mRNA mRNA downstream 69229 4062703 ~ 4083560 (+) True CI01000016_04062946_04083356
TU108565 other upstream 129417 3862175 ~ 3862305 (+) True G95439
TU106281 other upstream 3065742 905400 ~ 927532 (+) True G93406
TU108786 other downstream 279162 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 841084 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 1226406 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 1412395 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other downstream 1413274 5406748 ~ 5406829 (+) True G95870

Expression Profile