RNA id: TU110071


Basic Information

Item Value
RNA id TU110071
length 424
lncRNA type read_through
GC content 0.40
exon number 2
gene id G96742
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4003345 ~ 4065351 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCTTTGAACCTCTGAGAATTTCACCGTTTATTAAAAAAGGAGGGCAATAGAAAAATACATATAGGCTACATTTGTACACATTTCAACTTCAATTCAAATGTTAAGTGTGATAGGATCCATCTCACAGATACGTTTATAACTGAAATCACAGGGCACGTCAAACCAGGTTTTAGAGCGTGAGTCCAGCACTGCGCAGTCTTCTCCATGAATCCCACCTGACTCGTGATTATTGGGCTCTTCATGCCATTCATTCCAGTACCTAAAGAGAGCAGCGGTGAGTCCAGACGAAATACCACAAAAACATCATAATCCCACCCAGTGATGCCAATTCAGCAATTTTGTTGCTAGATTTAACACTTTCCAGACTACCCTGGCAACCTAGCAACAAATTTAGCTATTTTTAAGATGTATTTGTGGTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110059 lncRNA downstream 10522 3992611 ~ 3992823 (-) True G96736
TU110047 lncRNA downstream 14531 3986802 ~ 3988814 (-) True G96724
TU110045 lncRNA downstream 19341 3980704 ~ 3984004 (-) False G96723
TU110046 lncRNA downstream 19462 3980704 ~ 3983883 (-) True G96723
TU110052 lncRNA downstream 29297 3973807 ~ 3974048 (-) True G96729
TU110122 lncRNA upstream 184 4065535 ~ 4065881 (-) True G96788
TU110123 lncRNA upstream 3002 4068353 ~ 4068554 (-) True G96789
TU110128 lncRNA upstream 52946 4118297 ~ 4120351 (-) True G96793
TU110127 lncRNA upstream 55165 4120516 ~ 4122375 (-) False G96792
TU110126 lncRNA upstream 55328 4120679 ~ 4122289 (-) True G96792
CI01000016_03921124_03930996.mRNA mRNA downstream 72183 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_03881771_03883341.mRNA mRNA downstream 119879 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 160079 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 280287 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 327760 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_04084854_04101874.mRNA mRNA upstream 19373 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 115912 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 161088 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 198578 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
CI01000016_04277441_04297655.mRNA mRNA upstream 211607 4276958 ~ 4298217 (-) True CI01000016_04277441_04297655
TU110003 other downstream 72294 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 338032 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1017704 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1727070 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 847357 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1260168 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1346908 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2093635 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4823482 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile