RNA id: TU110123


Basic Information

Item Value
RNA id TU110123
length 202
lncRNA type intronic
GC content 0.38
exon number 1
gene id G96789
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4068353 ~ 4068554 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAGATAATTGAATCTACTTTAAGATGTAAGGTGTTGATGAATCACATTCAATTAATGTGAAGAGCATGTCAGGTGTGTCCTGCTCCTGGAGGATAAATGTCCTGCAAAGTTCAGCTCCAACCAAACACATGTGAACCAGCTAAACAAGGTCTTCAGGATTACTAGAAATATCCATGCTATACTCTCAGGAAAAATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110122 lncRNA downstream 2472 4065535 ~ 4065881 (-) True G96788
TU110067 lncRNA downstream 3002 4062725 ~ 4065351 (-) False G96742
TU110128 lncRNA upstream 49743 4118297 ~ 4120351 (-) True G96793
TU110127 lncRNA upstream 51962 4120516 ~ 4122375 (-) False G96792
TU110126 lncRNA upstream 52125 4120679 ~ 4122289 (-) True G96792
TU110145 lncRNA upstream 113947 4182501 ~ 4182967 (-) True G96810
TU110092 lncRNA upstream 253851 4322405 ~ 4367971 (-) True G96758
CI01000016_04044171_04047247.mRNA mRNA downstream 21048 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_03921124_03930996.mRNA mRNA downstream 137191 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_03881771_03883341.mRNA mRNA downstream 184887 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 225087 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 345295 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_04084854_04101874.mRNA mRNA upstream 16170 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 112709 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 157885 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 195375 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
CI01000016_04277441_04297655.mRNA mRNA upstream 208404 4276958 ~ 4298217 (-) True CI01000016_04277441_04297655
TU110003 other downstream 137302 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 403040 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1082712 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1792078 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 844154 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1256965 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1343705 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2090432 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4820279 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile