RNA id: TU110197



Basic Information


Item Value
RNA id TU110197
length 1547
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G96857
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4401724 ~ 4413705 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGATTAATCGCGATTAAAATTTTTAATCTATTGACAGCACTATTATAAATCCATTGGGTGTTTTGATGAACTAAAAAGAACCTGAGTCATTTGCTCGGGAATCGGACTTTACTTGTTTGATTCACTAAAAAGGTTTATAAGAGTAATTTGTTAAGGAATTGTACAACCTGGTCATGCTGAGTGTTTTTGATGAACAATAAAGAACAGGTTCATAAGATTCATTCACTTTGGAATCGGACTACATTGGTTGCACTGTATTTTTTGATTCTTGGCTCCCAACCCTTCTAAACAGTATTCAAATGCTTAGATGACTGAACGTGCTCACAGTGACAGTAGCCAGCAGACCCTCAGGCACATTAGCGACAATGATTCCGATGAGGAAAATGACAGCCTCCAGCCAGGAGTATCCCAAAATGATTGACAGAACGAAGAAAGACAGTCCCAGGAAGACAGCCACGCCTGTGATGATGTGAATAAAGTGCTCAATCTCCTTGGCGATGGGGGTTTTCCCTGTCTCCAGTCCTGAGGTCAGCGTAGCAATGCGGCCCATCACGGTGCGGTCACCAGTGCAGACCACAATACCACGAGCAGTGCCTAACAGTGAAACAGAAAAAGTCACGCTTCTGAACTTGACTTTTATGTAGATAAACCAATTCAACACTGTAGTAAATCCCTCACCTTCCACACAGTTAGTGGAGAAGAAAGCGATGTTGCGGGTTTCCAGAGGGTTGTCATGAGTGCAGTCAGGTGATCTTGTCTGAGGTTCTGATTCGCCGGTGAGGGAGGAGTTATCCACCTATGTATGATGCCAAAGACACACAATTGTCCACCACAGGTTTCACAGATTCTTGACAAACGACTGAGGTTTATAAACCACGTACCTTGCAGCCATGAGAAGAGACGATTCTGAGGTCAGCTGGGATTCGGTCTCCACCTTTGACCTCCACCAGGTCGCCTGCTACCACTTCCTCAGCATTGATCTGCATCTTCTCTCCTTCACGAATCACTAACGCTTGCTGTAGACAGAAAGAGTGTCAATTCTATTCACTGTTTCTTTGTGTTTCTGTGTCTTTTAATTTTTGCATGGAATGTTGTCAGTACCTGTGGCACCATGTTTTTAAAGGACTCCATGATCTTGGAGCTCTTTGCCTCCTGGAAGTAGGAGAAGCAGCCAGTAATGATGACCACAGCAGACAGCACGATTCCATACACACATTATCTCCAGCCGGCTCGTCTTCGGTGGCAGCCTGAATAGCATAGGCCAGAAAGCAGAGAATGGCTCCGGTCCACAGCAAGATGGAGAAACCACCAAACAGCTGACGACAGAATTTAATCCACTCAGGTGTTGTGGGTGGAGGGGTCAGAGCATTTGGCCCGTCTCGCAACAGAAAATCTCTGGCCTTTGCATTAGTTAAACCCTTTTGCAGAGAGAGAAAGAGAGAGATCATTGTCAAAATTAATCATTAGCAAAAGTTACTATTAATACACATTCGGTTTTATTTTAAGTACTCACAGTGTAAATATATTATATATGTTGTGTACTAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110214 lncRNA downstream 33036 4368379 ~ 4368688 (-) True G96872
TU110092 lncRNA downstream 33753 4322405 ~ 4367971 (-) True G96758
TU110145 lncRNA downstream 218757 4182501 ~ 4182967 (-) True G96810
TU110127 lncRNA downstream 279349 4120516 ~ 4122375 (-) False G96792
TU110126 lncRNA downstream 279435 4120679 ~ 4122289 (-) True G96792
TU110196 lncRNA upstream 3876 4407252 ~ 4413705 (-) True G96857
TU110261 lncRNA upstream 78573 4481949 ~ 4482313 (-) True G96909
TU110264 lncRNA upstream 82506 4485882 ~ 4486133 (-) True G96912
TU110302 lncRNA upstream 92036 4495412 ~ 4513049 (-) True G96936
TU110309 lncRNA upstream 117834 4521210 ~ 4521422 (-) True G96943
CI01000016_04385978_04389107.mRNA mRNA downstream 11654 4385722 ~ 4390070 (-) True CI01000016_04385978_04389107
CI01000016_04370577_04377413.mRNA mRNA downstream 23607 4370042 ~ 4378117 (-) True CI01000016_04370577_04377413
CI01000016_04333323_04333836.mRNA mRNA downstream 67888 4332873 ~ 4333836 (-) True CI01000016_04333323_04333836
CI01000016_04300720_04301736.mRNA mRNA downstream 98217 4300649 ~ 4303507 (-) True CI01000016_04300720_04301736
CI01000016_04277441_04297655.mRNA mRNA downstream 103507 4276958 ~ 4298217 (-) True CI01000016_04277441_04297655
CI01000016_04422169_04424433.mRNA mRNA upstream 18619 4421995 ~ 4424433 (-) True CI01000016_04422169_04424433
CI01000016_04636548_04646848.mRNA mRNA upstream 232451 4635827 ~ 4646916 (-) True CI01000016_04636548_04646848
CI01000016_04696937_04698098.mRNA mRNA upstream 293309 4696685 ~ 4698618 (-) True CI01000016_04696937_04698098
CI01000016_04802496_04812976.mRNA mRNA upstream 399078 4802454 ~ 4813266 (-) True CI01000016_04802496_04812976
CI01000016_04921091_04922518.mRNA mRNA upstream 517492 4920868 ~ 4922518 (-) False CI01000016_04921091_04922518
TU110003 other downstream 470673 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 736411 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1416083 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2125449 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 509332 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 922143 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1008883 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1755610 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4485457 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile