RNA id: TU110316



Basic Information


Item Value
RNA id TU110316
length 1317
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G96948
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4537680 ~ 4539061 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTACAAATAAATTGGCCAATTCTATACAGGTTGTCGATTTATTTTCTTTGTTTAAGCAAAGTTATTTGATGTTTATTTGCTCTTTATAAAACGGTTAGTTCCTGTCCTTGATTCTGATTGGTCAATAACTGTGTTTTATTCACGATAAAACATGGCTATGACCGCTTCACCCAACAGTTCTGTGAATCACTACACAACACCCTTAGCAACCACTCTTAGCAACATAAACTGTTTGTTCTCAGTTGATATTGTTTATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTGAGAAAGAGATCGATTGAGCGAGTTTATTACCTGCATTCAGATTTAGAATTTTCCTTCAGGTCAATCCATATGTTCATAATAAAAATCTGTTTAAATGTCTCATGTATTATCTTGTCCTTTTAACAGTTAAGGGGTTTTCCCGTGACTGACAGCGCTAGTCAAAGCATTTGTCAGTTGCATCTTGTCCCGTGTTCACAACAATTCAGTCTTTTCAATGTAAAAGTATTCACTACTGACTGACACTCATAAAGACAGTCTTTGCCGCCATCTAATGGCGTTATAATGCAACGTCTGTTGCTGTTCACGGTCAGGGACTATTTTTCCGGCGGAAGGAAGGCTTTTGGTGAAAGTTTACTTCATGAAAGTTGCACTAATACATATTTTTGGCTTTAATATTTGTATTGTGTGGTAATCGTTTTATAAAAGCAATAAGGTACTCGAGGCTAGTGCTGTATCGTACCTTATTGCTTACATAACAGCCCAAACTGGCCTTTAACAAAAAAAATATCTGTAGCCATTTGAAATTAGAGAAAAACACTGAATTTAATCATGATACAAACAAAGATACTACAAACATGTAGCATGAGCAGTTGTTTAAATTAGATTGTATAATTTCAAAATTTAAAGCAAAAACTGAATGGTCTGACTTTAGATTTGTGCCACATATGACACACTTGCATAAAACAAAAACAGCAGACAGACTGAACGAAAATGCTAATTCACTCTCCGACAGTAAGTGGCGCTTATAGAACAACGGCAATTTAGCATTTGCTCGGTTACCGCTGTACAAATCAGCCCTGCGCTTATAAACTGGCATTATAGAGAGGAAGAAAAGAGGAAAAAGATAATGTCATCGAAACTTTTCTGAAGACAGTCACTTCCCTTTAGAGATACATTCATATAAACCCCTAATCCCAATTCAATATTTATATTTTTCTTCCAATATTTCGGTCATCACGAACAGTGAGCTGCAGTCTTCAGGGTGTCCCGTCCTGTTTACAGACTTGTAATGTTTCCACACAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110309 lncRNA downstream 16258 4521210 ~ 4521422 (-) True G96943
TU110302 lncRNA downstream 24631 4495412 ~ 4513049 (-) True G96936
TU110264 lncRNA downstream 51547 4485882 ~ 4486133 (-) True G96912
TU110261 lncRNA downstream 55367 4481949 ~ 4482313 (-) True G96909
TU110196 lncRNA downstream 123975 4407252 ~ 4413705 (-) True G96857
TU110333 lncRNA upstream 47199 4586260 ~ 4586530 (-) True G96960
TU110334 lncRNA upstream 48490 4587551 ~ 4587793 (-) True G96961
TU110335 lncRNA upstream 49970 4589031 ~ 4589245 (-) True G96962
TU110336 lncRNA upstream 57564 4596625 ~ 4596862 (-) True G96963
TU110337 lncRNA upstream 59473 4598534 ~ 4598792 (-) True G96964
CI01000016_04422169_04424433.mRNA mRNA downstream 113247 4421995 ~ 4424433 (-) True CI01000016_04422169_04424433
CI01000016_04385978_04389107.mRNA mRNA downstream 147610 4385722 ~ 4390070 (-) True CI01000016_04385978_04389107
CI01000016_04370577_04377413.mRNA mRNA downstream 159563 4370042 ~ 4378117 (-) True CI01000016_04370577_04377413
CI01000016_04333323_04333836.mRNA mRNA downstream 203844 4332873 ~ 4333836 (-) True CI01000016_04333323_04333836
CI01000016_04300720_04301736.mRNA mRNA downstream 234173 4300649 ~ 4303507 (-) True CI01000016_04300720_04301736
CI01000016_04636548_04646848.mRNA mRNA upstream 96766 4635827 ~ 4646916 (-) True CI01000016_04636548_04646848
CI01000016_04696937_04698098.mRNA mRNA upstream 157624 4696685 ~ 4698618 (-) True CI01000016_04696937_04698098
CI01000016_04802496_04812976.mRNA mRNA upstream 263393 4802454 ~ 4813266 (-) True CI01000016_04802496_04812976
CI01000016_04921091_04922518.mRNA mRNA upstream 381807 4920868 ~ 4922518 (-) False CI01000016_04921091_04922518
CI01000016_04927541_04930989.mRNA mRNA upstream 387033 4926094 ~ 4930989 (-) True CI01000016_04927541_04930989
TU110003 other downstream 606629 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 872367 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1552039 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2261405 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 373647 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 786458 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 873198 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1619925 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4349772 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile