RNA id: TU110454


Basic Information

Item Value
RNA id TU110454
length 417
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G97074
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4877344 ~ 4877782 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCTCCCCCTTTGCCTTTCTGACGGGCATTGTGTCGATAATCATAACCTTGAGGACTAGACTCATTTAAAGTAATGTAATCGTCTGGTTTTAGCCAAGTTTCTGTCAAACACAGCACATCTAGATTATTATCTTTGATTTTGAAGAAAGGGATCTAATATTTAACAACCCGAGTTTTATCATTTGTTTAGCATTATTATCTCTATTTTTTATTTGTTGAACATCAATTAAATTTTTACCATTAAATGGGTTTGGAAGTTTTTTGTTTTTACTAATTCGGGGTACAGACACAGTCTCTATTTGAAAATATCTAGGTGTAAGAGTTTCTATGTGTTGAGAGTTATCTGAATTTTCTGACTTCTGTAACGTGAGGCAGCTAGCAGACGGTCGGTTTAGCCAGTCTGTCTGCTTTCTGACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110447 lncRNA downstream 24282 4852100 ~ 4853062 (-) True G97069
TU110356 lncRNA downstream 190230 4686861 ~ 4687114 (-) True G96983
TU110350 lncRNA downstream 212362 4664759 ~ 4664982 (-) True G96977
TU110272 lncRNA downstream 222947 4649487 ~ 4654397 (-) True G96916
TU110280 lncRNA downstream 248063 4628038 ~ 4629281 (-) True G96921
TU110471 lncRNA upstream 79419 4957201 ~ 4957444 (-) True G97091
TU110472 lncRNA upstream 79735 4957517 ~ 4957738 (-) True G97092
TU110476 lncRNA upstream 82116 4959898 ~ 4960153 (-) True G97096
TU110477 lncRNA upstream 84804 4962586 ~ 4963644 (-) True G97097
TU110478 lncRNA upstream 86626 4964408 ~ 4964631 (-) True G97098
CI01000016_04802496_04812976.mRNA mRNA downstream 64078 4802454 ~ 4813266 (-) True CI01000016_04802496_04812976
CI01000016_04696937_04698098.mRNA mRNA downstream 178726 4696685 ~ 4698618 (-) True CI01000016_04696937_04698098
CI01000016_04636548_04646848.mRNA mRNA downstream 230428 4635827 ~ 4646916 (-) True CI01000016_04636548_04646848
CI01000016_04422169_04424433.mRNA mRNA downstream 452911 4421995 ~ 4424433 (-) True CI01000016_04422169_04424433
CI01000016_04385978_04389107.mRNA mRNA downstream 487274 4385722 ~ 4390070 (-) True CI01000016_04385978_04389107
CI01000016_04921091_04922518.mRNA mRNA upstream 43086 4920868 ~ 4922518 (-) False CI01000016_04921091_04922518
CI01000016_04927541_04930989.mRNA mRNA upstream 48312 4926094 ~ 4930989 (-) True CI01000016_04927541_04930989
CI01000016_04936283_04939240.mRNA mRNA upstream 58231 4936013 ~ 4939240 (-) True CI01000016_04936283_04939240
CI01000016_04971399_04981029.mRNA mRNA upstream 93560 4971342 ~ 4981400 (-) True CI01000016_04971399_04981029
CI01000016_04995532_04996727.mRNA mRNA upstream 117030 4994812 ~ 4996727 (-) True CI01000016_04995532_04996727
TU110003 other downstream 946293 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1212031 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1891703 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2601069 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 34926 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 447737 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 534477 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1281204 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4011051 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile