RNA id: TU110413


Basic Information

Item Value
RNA id TU110413
length 1334
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G97037
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4969389 ~ 4970780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTCACTGGTAGGGTTTCAACTACCACGAAAAGCAGAATTTTGCTGAGGTAACAAAATCAACAGCATTATACAAATGTTTTTTTTTTTTTTTTTTTTTTTTAAATTGACGACAAAGTAGTCATAATGGCTGTGCTGCACTGATGTATTAGAAAATGGCATCTTTTCAAAAAGAGAACATGGAAAATTTTAGTTTTAAAATCACTCAGACTATACAAACTGAAATCGTGATTACTTTCCAATCCCAAATAAAAACAACAATCACTTCTCCTCTTGTTCATGTCATTGCACTCTTTTCAGGCCATGACAGAGAAGTACGAGGTATTCTTGCCCATCCTGCTAATCCGAGGCACCCCCGGGGTCCTAAAACAGCCTTGCACATCTGGGCGAGCTCACGACGGAACTTCACCCCCACAAGGCCGTAGAGTAGTGGATTTAAAGCGCAATGCGCCAGCCCCAGGCTTTCGGTCACCAGAATGCCCACATCCAGCACCTTGTTCAGCGCACAGCTTTTGACAATGACCCCGAGCGCCTGCAGACTGTCGGTCAGCCGAAGGGCATTATAAGGCGCCCAACTGACCACAAACACAATGACCAATGAGACGATGAGCCTTAGAGAGCGTCGTTTCTGCCTACGCGTGGCGTGGCACAGTGCTTTGAAAATGCGAAGGTAGCAATACAGCATGACCAGTAGGGGTAGAATGAATCCAAGAATCAAACCAACCAGCTGCATGCCGACCTGCCATAGCTGGAAGTTCTTTTGAGAATACACTGTCTGGCACACCAACCGATTCATTCCTTGTACTTTCACCACGTTACGGTAGAGCACATCCACCATGGCCAATCCCAAGCAGACGACCCAGATGATGGCGCAGGCCAGCTGAGCGTGGCAGGTCTTGCGTCTCCAGCTGATATTGATGGCATGTACGATAGCCAAGTATCGGTCAAAGCTGATGCAGGCCAGGAATAGCACCCCACAATAGACATTCAGCGAGAACATCGCTCCGGCTATTTTACACATGAACACGCCAAACACCCACTGGTTGATCCACTCGACAGCGAAAAATGGCAACGTGACAGCCAGTAGGAGGTCAGAGACGGCCAAATGGAGCAGGAAGGTGTCCGTCAGTGAGAAGGAGCAGGGACTGTGTCGAGACTGACGATAGCGGCGGATCACACACAGCACTAGAACATTACCAACTAGTGCCAGGATAAAGACTAGGATGTAAGCTACAGGGGCAAAGCGACCAAGAAATTCCCATGATTCCTTCAGACTACAGGGGGCAGCACTGGCATCATCATGGTAATTTTCGTCATATTCATAGTCATATTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110481 lncRNA downstream 2087 4967002 ~ 4967302 (-) True G97101
TU110480 lncRNA downstream 3083 4966094 ~ 4966306 (-) True G97100
TU110478 lncRNA downstream 4758 4964408 ~ 4964631 (-) True G97098
TU110477 lncRNA downstream 5745 4962586 ~ 4963644 (-) True G97097
TU110476 lncRNA downstream 9236 4959898 ~ 4960153 (-) True G97096
TU110421 lncRNA upstream 96904 5067684 ~ 5073528 (-) True G97045
TU110521 lncRNA upstream 152300 5123080 ~ 5123476 (-) True G97135
TU110525 lncRNA upstream 220246 5191026 ~ 5191428 (-) False G97139
TU110530 lncRNA upstream 220446 5191226 ~ 5191428 (-) True G97139
TU110387 lncRNA upstream 222012 5192792 ~ 5204813 (-) False G97012
CI01000016_04936283_04939240.mRNA mRNA downstream 30149 4936013 ~ 4939240 (-) True CI01000016_04936283_04939240
CI01000016_04927541_04930989.mRNA mRNA downstream 38400 4926094 ~ 4930989 (-) True CI01000016_04927541_04930989
CI01000016_04921091_04922518.mRNA mRNA downstream 46871 4920868 ~ 4922518 (-) False CI01000016_04921091_04922518
CI01000016_04802496_04812976.mRNA mRNA downstream 156123 4802454 ~ 4813266 (-) True CI01000016_04802496_04812976
CI01000016_04696937_04698098.mRNA mRNA downstream 270771 4696685 ~ 4698618 (-) True CI01000016_04696937_04698098
CI01000016_04971399_04981029.mRNA mRNA upstream 562 4971342 ~ 4981400 (-) True CI01000016_04971399_04981029
CI01000016_04995532_04996727.mRNA mRNA upstream 24032 4994812 ~ 4996727 (-) True CI01000016_04995532_04996727
CI01000016_05011639_05013290.mRNA mRNA upstream 38993 5009773 ~ 5013290 (-) True CI01000016_05011639_05013290
CI01000016_05037135_05040030.mRNA mRNA upstream 66355 5037135 ~ 5041364 (-) True CI01000016_05037135_05040030
CI01000016_05052905_05056425.mRNA mRNA upstream 81595 5052375 ~ 5056425 (-) True CI01000016_05052905_05056425
TU110416 other downstream 45985 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1038338 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1304076 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1983748 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2693114 2270836 ~ 2276275 (-) True G94786
TU110385 other upstream 354739 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 441479 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1188206 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3918053 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3966009 8936789 ~ 8936818 (-) True G98677

Expression Profile