RNA id: TU112396


Basic Information

Item Value
RNA id TU112396
length 213
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G98776
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9101601 ~ 9101813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCCTTAATCTGCACGTTTTCACCCATGGTGCCATCATTTTGTTTTCACAAGAGAAAACCGTGTACCAGTTCTAAGGCCATGGAAAAAGTTCGAGCAAAGCATGCTAATTGTTCTGTCGTTGGCTGCACAGACGAGCACAGAACACTATTTAGAGTCTCGTTAGCTTGGATGGCCTGCAAGTTGACCCTGGCAAGCTCGATTGCTAAAAAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112311 lncRNA downstream 43483 9057812 ~ 9058118 (-) True G98694
TU112275 lncRNA downstream 175833 8924510 ~ 8925768 (-) True G98658
TU112289 lncRNA downstream 184928 8915922 ~ 8916673 (-) True G98672
TU112335 lncRNA downstream 230085 8871275 ~ 8871516 (-) True G98715
TU112329 lncRNA downstream 284712 8816414 ~ 8816889 (-) True G98709
TU112398 lncRNA upstream 1410 9103223 ~ 9103458 (-) True G98778
TU112292 lncRNA upstream 3581 9105394 ~ 9107226 (-) True G98675
TU112283 lncRNA upstream 54856 9156669 ~ 9158272 (-) True G98666
TU112408 lncRNA upstream 73369 9175182 ~ 9175879 (-) False G98783
TU112403 lncRNA upstream 73618 9175431 ~ 9175917 (-) False G98783
CI01000016_09060801_09086358.mRNA mRNA downstream 13402 9060522 ~ 9088199 (-) True CI01000016_09060801_09086358
CI01000016_08947581_08961131.mRNA mRNA downstream 140470 8946148 ~ 8961131 (-) True CI01000016_08947581_08961131
CI01000016_08926089_08945071.mRNA mRNA downstream 156530 8925960 ~ 8945071 (-) False CI01000016_08926089_08945071
CI01000016_08920718_08923668.mRNA mRNA downstream 177553 8920465 ~ 8924048 (-) True CI01000016_08920718_08923668
CI01000016_08906943_08914821.mRNA mRNA downstream 186661 8906612 ~ 8914940 (-) True CI01000016_08906943_08914821
CI01000016_09107780_09122244.mRNA mRNA upstream 5596 9107409 ~ 9122290 (-) True CI01000016_09107780_09122244
CI01000016_09129190_09132103.mRNA mRNA upstream 25795 9127608 ~ 9132103 (-) True CI01000016_09129190_09132103
CI01000016_09164404_09171973.mRNA mRNA upstream 62591 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09185530_09205841.mRNA mRNA upstream 83591 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09212039_09212358.mRNA mRNA upstream 110184 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
TU112294 other downstream 156372 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 206864 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 2941880 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3683384 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3770755 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU112296 other upstream 133183 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 154289 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 407809 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 407838 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 407838 9511357 ~ 9511415 (-) True G98896

Expression Profile