RNA id: TCONS_00014493


Basic Information

Item Value
RNA id TCONS_00014493
length 897
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_007356
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30557361 ~ 30620537 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGTGTCAGTCTATCCTCTTCCTCCAAGCCCTCTGTAGTGACAGTCAAGGCAATATGGCAGCGCGCATGGTTCAAATTCTAACGTGAAGGTCTTTTTTCGGGTGTGCGCGACCACATAGAATCACAACAGCAGGGAAAGGGGACGGACAGACGTGCGGCAGGCCAGACACAGAGACAATATGTCTAAGATATCTAAAGCAGCAAAGGCGGTGAAAAAGTTGGATACTGGAGGACTGATCAGAGCGATTGTACGGTCCGGACAGGCGGCTCCCGGGCCTCCGCTGGGCCCCATCCTGGGACAGAAAGGGATTCCCATCGGAGCCTTCTGCAAAGACTTCAATGAGAGAACCAAAGACCTCAAAGAAGGCATTCCTCTTCCCGTCAAGATCAATGTGAAGCCGGACCGGACGTATGACCTGAAAATTGGGCAGCCCACTGTGTCTTACTTCTTGAAACAGGCTGCCGGCATTGAGAAAGGAGCTGGAAAGACTGGGCATGAGATCGCGGGGATGGTGACTGTGAGGGCCGTATATGAGATTGCACGGGTCAAATCGCAGGATGAGTGCTTTAAGCTGCGGGACACCACCATGCAGAACGTGGTCAAGAGCATCATCGGTTCAGCCAGATCCCTCGGCATACAAGTAGTGAACGACCTGTCACCAGAGGAGTACGGCGAGTTTCTCCGAGAGCGTGAAGTGATACTGAAGGCTCAAGCAGAAGCAGCCGCAgctgaagcagcagcagcagcagcagcagtcaagAAGAAATGAAGAGCTACTCTGTGCTCCACTTATTtatcattgcaaaaaaaaaaaaaaagacatctgtTCACATGGATTCCCCCTGCTATTCTGGTTGTGTTTTTCTAATAAAATGCTGCTGATTTGCATGCAGA

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040718-294 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL11 (mitochondrial ribosomal protein L11).

Ensembl:

ensembl_id ENSDART00000019898

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016235 lncRNA upstream 101525 30454100 ~ 30455836 (+) True XLOC_007353
TCONS_00016234 lncRNA upstream 134174 30415062 ~ 30423187 (+) True XLOC_007352
TCONS_00014486 lncRNA upstream 204225 30352457 ~ 30353136 (+) True XLOC_007350
TCONS_00014480 lncRNA upstream 283248 30272894 ~ 30274113 (+) True XLOC_007348
TCONS_00016232 lncRNA upstream 314234 30079114 ~ 30243127 (+) True XLOC_007347
TCONS_00014497 lncRNA downstream 4996 30625346 ~ 30627451 (+) True XLOC_007357
TCONS_00014503 lncRNA downstream 134098 30754448 ~ 30757529 (+) True XLOC_007360
TCONS_00016236 lncRNA downstream 173558 30793908 ~ 30794980 (+) True XLOC_007362
TCONS_00014512 lncRNA downstream 175275 30795625 ~ 30799363 (+) True XLOC_007363
TCONS_00016237 lncRNA downstream 468627 31088977 ~ 31092396 (+) False XLOC_007365
TCONS_00014492 mRNA upstream 12695 30543008 ~ 30544666 (+) True XLOC_007355
TCONS_00014491 mRNA upstream 63610 30491890 ~ 30493751 (+) True XLOC_007354
TCONS_00014488 mRNA upstream 131377 30413312 ~ 30425984 (+) False XLOC_007352
TCONS_00014489 mRNA upstream 132507 30413758 ~ 30424854 (+) False XLOC_007352
TCONS_00014487 mRNA upstream 145220 30398546 ~ 30412141 (+) True XLOC_007351
TCONS_00014498 mRNA downstream 110399 30730749 ~ 30734935 (+) True XLOC_007358
TCONS_00014500 mRNA downstream 133316 30753666 ~ 30759503 (+) False XLOC_007360
TCONS_00014501 mRNA downstream 133390 30753740 ~ 30759503 (+) False XLOC_007360
TCONS_00014502 mRNA downstream 133442 30753792 ~ 30757287 (+) False XLOC_007360
TCONS_00014504 mRNA downstream 141781 30762131 ~ 30770940 (+) True XLOC_007361
TCONS_00014490 other upstream 132507 30413777 ~ 30424854 (+) False XLOC_007352
TCONS_00014442 other upstream 3726795 26796904 ~ 26830566 (+) False XLOC_007327
TCONS_00014405 other upstream 6199844 24357400 ~ 24357517 (+) True XLOC_007298
TCONS_00014372 other upstream 7184889 23187112 ~ 23372472 (+) True XLOC_007280
TCONS_00014367 other upstream 7401705 23076127 ~ 23155656 (+) False XLOC_007280
TCONS_00014499 other downstream 120638 30740988 ~ 30741116 (+) True XLOC_007359
TCONS_00014522 other downstream 889591 31509941 ~ 31519774 (+) True XLOC_007368
TCONS_00014524 other downstream 912733 31533083 ~ 31533220 (+) True XLOC_007370
TCONS_00014526 other downstream 920093 31540443 ~ 31540598 (+) True XLOC_007371
TCONS_00014529 other downstream 1013971 31634321 ~ 31641844 (+) True XLOC_007373

Expression Profile

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