RNA id: TU112661


Basic Information

Item Value
RNA id TU112661
length 279
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G99013
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9747983 ~ 9748261 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATAATATAATTAAACTTCTTATTCTATTAGTGAAATATCATATACATAAAGCAAAATGTATATCGACTACCAAATGGTAGACTATTTTCCACTGATTTGAAGATTTTTTACGACTCTCTAACTTCAATACAGAACAATCGAAAAGCTATCAAGACATCTAAGCTGGATACTTGATGTATTAGAAACATGATTGATTTGTGATATAAGATACAGAATTTTGATTTAATTGTTTCATAGATTCAAATGTCTTTGTATTCCCCCATTGTTGTTTCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112592 lncRNA upstream 150269 9597475 ~ 9597714 (+) True G98953
TU112589 lncRNA upstream 160670 9587112 ~ 9587313 (+) True G98950
TU112588 lncRNA upstream 161415 9586229 ~ 9586568 (+) True G98949
TU112574 lncRNA upstream 179772 9567985 ~ 9568211 (+) True G98935
TU112571 lncRNA upstream 184524 9563160 ~ 9563459 (+) True G98932
TU112671 lncRNA downstream 17717 9765978 ~ 9769724 (+) True G99022
TU112672 lncRNA downstream 21604 9769865 ~ 9773224 (+) True G99023
TU112673 lncRNA downstream 37349 9785610 ~ 9786563 (+) True G99024
TU112683 lncRNA downstream 108251 9856512 ~ 9856848 (+) True G99034
TU112689 lncRNA downstream 115742 9864003 ~ 9864223 (+) True G99040
CI01000016_09731997_09734823.mRNA mRNA upstream 13160 9731997 ~ 9734823 (+) True CI01000016_09731997_09734823
CI01000016_09686132_09706397.mRNA mRNA upstream 41530 9686132 ~ 9706453 (+) True CI01000016_09686132_09706397
CI01000016_09664848_09674309.mRNA mRNA upstream 73255 9664848 ~ 9674728 (+) True CI01000016_09664848_09674309
CI01000016_09663511_09664293.mRNA mRNA upstream 83488 9663511 ~ 9664495 (+) True CI01000016_09663511_09664293
CI01000016_09615039_09616082.mRNA mRNA upstream 130564 9612791 ~ 9617419 (+) True CI01000016_09615039_09616082
CI01000016_09748780_09759954.mRNA mRNA downstream 519 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09788926_09791625.mRNA mRNA downstream 40665 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09796196_09842235.mRNA mRNA downstream 47689 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09868120_09886212.mRNA mRNA downstream 119815 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_09897221_09902690.mRNA mRNA downstream 148585 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
TU111822 other upstream 745266 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1732208 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1962260 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2586693 7160641 ~ 7161290 (+) True G96389
TU109031 other upstream 4340120 5406748 ~ 5406829 (+) True G95870
TU112665 other downstream 47370 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 176157 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 486139 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 546130 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1923384 11671645 ~ 11672873 (+) True G99940

Expression Profile