RNA id: CI01000018_04397198_04411105.mRNA


Basic Information

Item Value
RNA id CI01000018_04397198_04411105.mRNA
length 3599
RNA type mRNA
GC content 0.50
exon number 18
gene id CI01000018_04397198_04411105
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4396649 ~ 4411105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTAGTGTATGGAAGATGTCTGGGATATTGGACTGGATACCCTGGGAAAGAAAGCGGAAGTTTCGAGCGCTGTGTGCCCTGGGTGCTCTGCTGTGCTGCCTGCAGGATAGTGCTGCTGTTAGAGAAACTGGGGGGCAGTGTAACCCTGCGCTGCAGCGCCCTGCCTAACCATGTCAACATCAGTTGGCGTCTAAACGGCCGGGAGCTGCCAGCTGGGGGCGATGAGGAGCTGGGAGTGCTGGTGCGGCCCGGTTCTCTCTACATCCCCTCCCTTACCAACCTCACCGTAGGCAGATACCAGTGTGTGGCCACCACCAGCGTCGGGTCCTGCGCTAGCGTGCCAGCCAACGTTACTGCAGCTAAACTGCGAGATTTTGAGCCAGATGACCAGCAGGAGATTGAGGTGGATGAAGGGAACACAGCGGTGATCGAGTGCCATCTGCCTGAGAGTCAACCTAAAGCTCAGGTCCGCTACAGTGTCAAACAGGAGTGGCTGGAGACATCTAAAGGAAATTACCTGATCATGCCATCTGGAAACCTTCAGATAGCAAATGCTACACAGGATGATGAGGGTCCTTATAAATGTGCTGCTTACAACCCTATCACCCAGGAAGTAAAAACCTCCACCTCTACCGATCGTCTTAGAATACGACGTTCAACATCTGAGGCCGCACGTATTATATATCCACCTGCATCTCGGTCCATTATGGTGAACAAAGGCCAGCGGCTTGTGCTCGAGTGTGTGGCCAGCGGCATTCCCACTCCACAGGTCACATGGGCTAAGGACGGTCTGGACTTGCGAAATCATAACAACACCCGCTTCTTACTTAGCAACTTGTTGATTGATGCGGCAAGCGAGAGTGACTCGGGCACTTACGTGTGTAACGCTGATAACGGCATTGGCTCTGCGAGATCTGCTACGGTGCTGTACGACGTGCAGGTGTTTGAGCCACCCCAGGTGCGTGTCGAGCTGCAGCAGCAAGACGTTGCATGGGGCGACACGGTGCGTTTCAGCTGTCAGGTGAGGGGCAAGCCCACTCCCACTGTGGTGTGGCTCCACAACTCTCAGCCATTGAGCCCGTCGCCACGCCATCGGGTGACTTCACAGGTGCTGCGTGTGCTCCACGTCGGGCCGCAGGATGATGGCATGTACCAGTGCATGGCGGAGAACGGCGTGGGCAGCTCACAGGCAGCCACAAGACTTCTCACTGTCCCAACAGGTAAGCTGCCCATGATTCGACCGATGAGCCCAGATAAAGTGCTGCGGGAACAGCCACCTGTGAAGCCTGTGGCCACCAGTGCAGTTCTGCCTTTCGACTGCTCTGAGGTCAGAGTCTCCCCCGCCGAAGCTCCAATCATCTCGAGTCAGCCGCGCACAGGAAGGGCCGACTACTATGAACTTACCTGGAAACCCCGTCATGATGGAGGAGCACCTGTGCTGGAGTATGTCGTCAAGTACAGAAAGGCTGGAGAATCTCCCGGAGAGTGGACCACTAACACCATTTCAGGCTCCCAGAACAAGCTGACTCTTACTAAACTGCTGCCTGCCAGCCTCTATGAAGTGGAGATGGCCGCTAAGAACTGCGCTGGATTAGGGCAGCCCGCGATGATGACTTTTAGAACAGGCAAATGGCGAAGAGGAGGACACACAGGGCCTCCAAAAACACCAGAGACGCCACCTCGTCTCACACCGCCAGAAGCTCCAGACAGACCCACTGTTTCTATGGCCACTGAGACCTCAGCCTATGTGACGTGGATCCCTCGCGGGAACCGTGGATTCCCCATCCAGTCATTCCGTGTAGAGTACAGGAAATTGAAGAAAGGCGGTGGAGAGTGGGAGGTGGCTGTAAACAATATCCCCCCCTCTCGCCTCTCAGTCGAGATAACAGGCCTGGAAAAAGGAACATCATACAAGTTCAGAGTTTTAGCCGTTAATGTTTTGGGAGAGAGTCCACCAAGCGCTCCCTCTAAAGCCTACACAGTGGTGGGCAGTGGTGCACCAAACCGACGTCCCATCGATGGGCCCTACATCACCTACAATGAAGCCATCAATGAGACAACGATCATCCTAAAATGGACGTACACACCAGTCAATAACACCCCCATTTATGGCTTCTACATCTTCTACCGACCCACCGATAGCGACAATGACAGTGACTACAAAAAGGACATAGTGGAAGACCTACAGCCTGAGACGGCTTATGACATTAAGATGCAGTGTTTCAACGAAGGGGGCGAGAGCGAGTTCGGAAATGTCGTCATTTTAGAAACTAAAGCTCGCCCTCACCAGAGGACCACACCTCCAGAGACATCATCGTCCAGACCCGACCATCCAGGAAACCCTGTTCCCAGGCCTGGTGATCTGCCTTACCTCATTGTGGGTGTGGTACTCGGAGCATTCGTTTTCATCATCGTAGCCTTCATCCCAATCTGTCTGTGGAGAGTTTGGGCCAAACAGAAACAAACTTTAGACATGCGCTTTCCAGCGTTGGCAGCTACAGTTTCTCCATGTCAGTACACCATGGTACCCCTGCAGGGATTGGCTCTGGGTCGGCCTTGTCCTGTAGACCCTCACCTGACACCTGCCCACACTGTCTACGCTCCTAAAGGAGAATATATTCCCAATGGAAAACACACTACACAGCGCCTTCCTGGACACCGGGAGGATGCTGACTATGAGTTGGAGTGTGATGCGTTGTTACCTCAGAAACTTCCCAGTCCGCAACAACATATCCACAATTACTGTAACGGGGTGTCTGGCTGCCCTGAAGAGGGATGCTGTGTGCCTGATGATTCCCCCTTGCAGGTCCTCAGATTATCGAGACCTACGCATCCATCTCAGAGTCCTGACTCCATGCAGGCCGATCACTCCCTCACTGAAGCAGTTCATTTGGATGGGGAGGTCACTGCCGACTTGCCCCTGTTAACAACAGTTGATACGGGCATAAACCGGTTGCTCCAAAATGCAGAGCAACAGGAAGTGGGAACAACACAGAACATGAAGCAGCTTGAGGAACAAGGGACAAGAGATGATCCAAAAGATGGATGAAACTGTAGAAAAAAGGGGGGGGGGAAGAGAAAATATTTATTTTTGTATAACAGATGCTATATTTATATATTTATGTATTTGTACATAGTACATTTTCTTTTAGAATGTATATATAGGTTTTTTTTATATACTATGTTAAACATATTTTGGTATGTTTGTCTGTTACCACCAGGACGTTTTTTATAAGTATGCTGTATAAATGATCCTCATGTGAGATAGGAACAACCTGACACCTCAACACCGTACATACAGTATCAGTAATAAGCTCTAGATTTTCTACTGGCAAGCATCTCTTGATGTTTGAAGTACAGCTGGTGGGAAATGTAATGCTTTTAGGGCATTATGATCCATTCATTAAGAATGTTGTAACGGGCAGTGCTTTGGGACAATTGACTGTTTAAAAACACTTTGCATCAAAAATATTTGTAGTATGTGTACTCCATATATGCATACATATTTTATGCACAGTATGTTGTATCCATTTAATAGCTTTATGGCATGTAGATGCTACTGTGAGGCTTAAACACTCAGATACACACAACAAATAAA

Function

GO:

id name namespace
GO:0008589 regulation of smoothened signaling pathway biological_process

KEGG:

id description
K20020 BOC; brother of CDO

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119664 lncRNA downstream 110657 4285739 ~ 4285992 (-) True G105277
TU119556 lncRNA downstream 158514 4234605 ~ 4238135 (-) False G105185
TU119557 lncRNA downstream 158514 4234605 ~ 4238135 (-) True G105185
TU119641 lncRNA downstream 177740 4218678 ~ 4218909 (-) True G105263
TU119639 lncRNA downstream 185391 4210897 ~ 4211258 (-) True G105261
TU119691 lncRNA upstream 21086 4432191 ~ 4432482 (-) True G105304
TU119693 lncRNA upstream 33697 4444802 ~ 4445367 (-) True G105306
TU119696 lncRNA upstream 43156 4454261 ~ 4454478 (-) True G105307
TU119591 lncRNA upstream 173523 4584628 ~ 4587775 (-) True G105213
TU119575 lncRNA upstream 201592 4612697 ~ 4615380 (-) False G105199
CI01000018_04361150_04364887.mRNA mRNA downstream 31762 4360619 ~ 4364887 (-) True CI01000018_04361150_04364887
CI01000018_04344907_04359005.mRNA mRNA downstream 37644 4344091 ~ 4359005 (-) True CI01000018_04344907_04359005
CI01000018_04336914_04342114.mRNA mRNA downstream 54535 4336589 ~ 4342114 (-) True CI01000018_04336914_04342114
CI01000018_04307560_04321214.mRNA mRNA downstream 74363 4306921 ~ 4322286 (-) True CI01000018_04307560_04321214
CI01000018_04248388_04258010.mRNA mRNA downstream 138611 4248122 ~ 4258038 (-) True CI01000018_04248388_04258010
CI01000018_04464837_04473051.mRNA mRNA upstream 53533 4464638 ~ 4473051 (-) True CI01000018_04464837_04473051
CI01000018_04491510_04539751.mRNA mRNA upstream 80130 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
CI01000018_04557779_04561445.mRNA mRNA upstream 146531 4557636 ~ 4561997 (-) True CI01000018_04557779_04561445
CI01000018_04595424_04596449.mRNA mRNA upstream 183360 4594465 ~ 4597587 (-) True CI01000018_04595424_04596449
CI01000018_04604468_04611851.mRNA mRNA upstream 192682 4603787 ~ 4611851 (-) True CI01000018_04604468_04611851
TU119577 other downstream 150639 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 378832 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 386074 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 896135 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 1995746 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 443976 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1480231 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1546501 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 2119342 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 2229507 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046318 False 4356 mRNA 0.49 19 NC_007135.7 21206243 ~ 21258945 (-)